Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   SALIVA_RS08425 Genome accession   NC_017595
Coordinates   1864245..1864988 (-) Length   247 a.a.
NCBI ID   WP_014634972.1    Uniprot ID   -
Organism   Streptococcus salivarius JIM8777     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1859245..1869988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVA_RS08395 (SALIVA_1715) - 1859519..1860463 (-) 945 WP_004183328.1 TIGR01212 family radical SAM protein -
  SALIVA_RS08400 (SALIVA_1716) sepM 1860549..1861625 (-) 1077 WP_014634969.1 SepM family pheromone-processing serine protease Regulator
  SALIVA_RS08405 (SALIVA_1717) coaD 1861603..1862100 (-) 498 WP_014634970.1 pantetheine-phosphate adenylyltransferase -
  SALIVA_RS08410 (SALIVA_1718) rsmD 1862133..1862732 (-) 600 WP_080568078.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  SALIVA_RS08415 (SALIVA_1719) trxB 1862823..1863776 (-) 954 WP_255296714.1 thioredoxin-disulfide reductase -
  SALIVA_RS08420 (SALIVA_1720) - 1863809..1864033 (-) 225 WP_002884393.1 DUF4059 family protein -
  SALIVA_RS08425 (SALIVA_1721) amiE 1864245..1864988 (-) 744 WP_014634972.1 amino acid ABC transporter ATP-binding protein Regulator
  SALIVA_RS08430 (SALIVA_1722) - 1864988..1865734 (-) 747 WP_148263030.1 amino acid ABC transporter permease -
  SALIVA_RS08435 (SALIVA_1723) - 1866332..1867162 (-) 831 WP_014634974.1 transporter substrate-binding domain-containing protein -
  SALIVA_RS08440 (SALIVA_1724) - 1867377..1868267 (-) 891 WP_014634975.1 hypothetical protein -
  SALIVA_RS08445 (SALIVA_1725) dinB 1868368..1869477 (-) 1110 WP_014634976.1 DNA polymerase IV -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27650.75 Da        Isoelectric Point: 6.3616

>NTDB_id=40321 SALIVA_RS08425 WP_014634972.1 1864245..1864988(-) (amiE) [Streptococcus salivarius JIM8777]
MISIKNLTKEFSGQKVLDGIDIDIEKGEVVALVGASGAGKSTILRSLNYLEQPDSGTITIDDFKVDFKTITKEQILTLRR
KLAMVFQQFNLFERRTALDNVKEGLKIVKKLSDDEATKIAKEELAKVGLSNRENHYPRHLSGGQKQRVALARALAMKPDV
LLLDEPTSALDPELVGEVEKSIADAAKSGQTMILVSHDMNFVYQVADKVLFLEKGHILEQGTPDEIFNHPKEERTKEFFA
SYSKQYL

Nucleotide


Download         Length: 744 bp        

>NTDB_id=40321 SALIVA_RS08425 WP_014634972.1 1864245..1864988(-) (amiE) [Streptococcus salivarius JIM8777]
ATGATTAGTATCAAAAACTTGACCAAGGAATTTTCAGGTCAAAAGGTTCTTGATGGTATTGATATTGACATTGAAAAGGG
TGAAGTTGTAGCTCTTGTTGGTGCCTCTGGTGCAGGGAAATCAACAATTCTTCGTAGCTTAAACTATTTGGAACAACCTG
ATTCTGGTACCATTACCATTGATGATTTTAAAGTCGACTTTAAGACTATCACCAAAGAACAAATCCTTACGCTTCGCCGT
AAGTTGGCCATGGTTTTCCAACAGTTCAACCTCTTTGAACGTCGTACAGCCTTGGATAATGTTAAGGAAGGTCTTAAGAT
TGTTAAGAAACTTTCTGACGACGAAGCTACCAAGATTGCTAAAGAAGAGCTCGCTAAGGTTGGGCTTTCTAATCGTGAAA
ATCACTACCCACGTCACTTGTCGGGTGGTCAAAAGCAACGTGTGGCCTTGGCTCGTGCCCTTGCAATGAAGCCTGATGTG
CTCTTGCTTGACGAACCAACATCTGCCCTTGACCCTGAGTTGGTCGGTGAGGTTGAAAAATCAATCGCTGATGCGGCTAA
GTCAGGTCAAACCATGATTTTGGTCAGTCACGACATGAACTTTGTTTATCAAGTAGCTGACAAGGTGCTTTTCCTTGAAA
AAGGGCATATCCTTGAACAAGGAACACCTGATGAAATCTTTAACCATCCAAAAGAAGAACGAACAAAAGAATTTTTCGCT
TCTTATTCAAAACAATATCTTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

33.712

100

0.36

Multiple sequence alignment