Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   SALIVA_RS08340 Genome accession   NC_017595
Coordinates   1848196..1848981 (-) Length   261 a.a.
NCBI ID   WP_002884784.1    Uniprot ID   -
Organism   Streptococcus salivarius JIM8777     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1843196..1853981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVA_RS08320 (SALIVA_1700) - 1843643..1844524 (-) 882 WP_014634957.1 glycosyltransferase family 2 protein -
  SALIVA_RS08325 (SALIVA_1701) - 1844528..1845736 (-) 1209 WP_014634958.1 glycosyltransferase -
  SALIVA_RS08330 (SALIVA_1702) - 1845955..1847394 (-) 1440 WP_014634959.1 6-phospho-beta-glucosidase -
  SALIVA_RS08335 (SALIVA_1703) - 1847580..1848131 (-) 552 WP_014634960.1 cysteine hydrolase family protein -
  SALIVA_RS08340 (SALIVA_1704) codY 1848196..1848981 (-) 786 WP_002884784.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  SALIVA_RS08345 (SALIVA_1705) - 1849249..1850463 (-) 1215 WP_004183315.1 pyridoxal phosphate-dependent aminotransferase -
  SALIVA_RS08350 (SALIVA_1706) - 1850827..1851279 (+) 453 WP_002891687.1 universal stress protein -
  SALIVA_RS08355 (SALIVA_1707) - 1851360..1852112 (-) 753 WP_014634961.1 hypothetical protein -
  SALIVA_RS08360 (SALIVA_1708) pflA 1852182..1852982 (-) 801 WP_014634962.1 pyruvate formate-lyase-activating protein -
  SALIVA_RS10820 (SALIVA_1709) - 1853169..1853897 (-) 729 WP_014634963.1 LPXTG cell wall anchor domain-containing protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28829.85 Da        Isoelectric Point: 4.3715

>NTDB_id=40319 SALIVA_RS08340 WP_002884784.1 1848196..1848981(-) (codY) [Streptococcus salivarius JIM8777]
MANLLAKTRKITSILQRSVDSLEGDLPYNNMAAQLADIIDCNAAIVNGGGALLGFAMKYKTNNDRVEEFFEAKQLPEEYT
RGISRVYDTQENIGIDSDLTIFPVESKDDFPDGLTTIAPIYGGGMRLGSFIIWRNDHDFVDEDLILVEIASTVVGLQLLN
LQTENLEETIRKQTAINMAINTLSYSEIKAVSAILNELDGLEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLNEGIYDKLKEYE

Nucleotide


Download         Length: 786 bp        

>NTDB_id=40319 SALIVA_RS08340 WP_002884784.1 1848196..1848981(-) (codY) [Streptococcus salivarius JIM8777]
ATGGCAAATTTGCTGGCTAAAACACGTAAAATTACATCTATCTTGCAACGCTCAGTAGACAGCTTGGAAGGAGATCTTCC
ATACAACAACATGGCTGCTCAATTGGCGGATATCATTGATTGTAACGCTGCTATCGTTAATGGTGGTGGTGCTCTCCTTG
GTTTTGCCATGAAGTACAAAACCAACAATGATCGTGTGGAAGAGTTTTTTGAAGCTAAACAACTTCCAGAAGAATACACA
CGTGGTATCAGCCGTGTTTATGATACTCAAGAAAACATTGGTATTGACAGTGACTTGACCATTTTCCCAGTGGAGTCAAA
AGATGACTTCCCAGATGGTTTGACTACAATTGCCCCTATCTATGGTGGTGGTATGCGTCTTGGTTCTTTCATCATTTGGC
GTAACGATCATGATTTTGTGGATGAAGATCTTATCTTGGTTGAGATAGCCTCTACGGTAGTTGGGTTGCAGTTGTTGAAC
CTTCAAACAGAGAACTTGGAAGAAACGATTCGTAAACAAACAGCTATTAACATGGCTATTAATACCTTGTCTTACTCAGA
AATCAAGGCAGTTTCAGCTATCTTGAACGAGTTGGACGGTTTAGAAGGTCGCTTGACAGCATCTGTTATCGCTGACCGTA
TCGGAATTACGCGTTCAGTTATCGTTAATGCCCTTCGTAAGTTGGAATCAGCTGGTATTATTGAGAGTCGTTCACTCGGT
ATGAAAGGGACTTATCTTAAAGTCCTTAACGAAGGTATCTACGACAAATTGAAAGAATACGAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(201-261)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

64.981

98.467

0.64
  codY Bacillus subtilis subsp. subtilis str. 168

53.036

94.636

0.502

Multiple sequence alignment