Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   FOC43_RS00875 Genome accession   NZ_CP046317
Coordinates   180338..180853 (+) Length   171 a.a.
NCBI ID   WP_002801535.1    Uniprot ID   -
Organism   Campylobacter coli strain FDAARGOS_735     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 175338..185853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC43_RS00850 (FOC43_00850) - 175794..176132 (+) 339 WP_002777761.1 hypothetical protein -
  FOC43_RS00855 (FOC43_00855) - 176141..176866 (+) 726 WP_002792130.1 phosphatidate cytidylyltransferase -
  FOC43_RS00860 (FOC43_00860) dxr 176863..177939 (+) 1077 WP_002777756.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  FOC43_RS00865 (FOC43_00865) - 177936..179330 (+) 1395 WP_002788428.1 M99 family carboxypeptidase catalytic domain-containing protein -
  FOC43_RS00870 (FOC43_00870) tsaD 179327..180334 (+) 1008 WP_004283557.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  FOC43_RS00875 (FOC43_00875) ctsG 180338..180853 (+) 516 WP_002801535.1 type II secretion system protein Machinery gene
  FOC43_RS00880 (FOC43_00880) - 180853..182094 (+) 1242 WP_052774887.1 DUF2920 family protein -
  FOC43_RS00885 (FOC43_00885) - 182104..183927 (+) 1824 WP_155820375.1 motility associated factor glycosyltransferase family protein -
  FOC43_RS00890 (FOC43_00890) - 183924..185741 (+) 1818 WP_155820378.1 motility associated factor glycosyltransferase family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18996.99 Da        Isoelectric Point: 8.4861

>NTDB_id=402608 FOC43_RS00875 WP_002801535.1 180338..180853(+) (ctsG) [Campylobacter coli strain FDAARGOS_735]
MKRAFTILELVFVIVILGILAAIALPKFSSSRDEAEVSKSLNNLKTLINDISIYALKNSHLNTMNFMSNVSGVENVDLNN
FIGIKEVNFRVGEDKECIKLIFIDRNDFVLMGISSNEASKNAIINIANNPKQEFQNLDFTSNSKNKACVALSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=402608 FOC43_RS00875 WP_002801535.1 180338..180853(+) (ctsG) [Campylobacter coli strain FDAARGOS_735]
GTGAAAAGAGCTTTTACTATATTAGAACTTGTTTTTGTTATCGTGATTTTAGGAATTTTAGCAGCGATTGCTTTGCCAAA
ATTCAGTTCTAGTAGAGATGAAGCTGAAGTGAGTAAATCCTTAAACAATCTTAAAACTTTAATCAATGATATAAGCATCT
ATGCCTTAAAAAATAGTCATTTAAACACTATGAATTTTATGAGCAATGTAAGTGGAGTAGAAAATGTCGATCTTAACAAT
TTTATAGGCATAAAAGAAGTAAATTTTAGGGTCGGAGAGGATAAAGAGTGTATAAAACTGATTTTCATCGATAGAAATGA
TTTTGTACTGATGGGAATTTCTAGTAATGAAGCAAGCAAAAATGCCATAATCAATATAGCCAATAACCCCAAACAAGAAT
TTCAAAACTTAGATTTTACAAGCAATTCAAAAAATAAAGCTTGCGTGGCACTAAGTAAAAATGAGAATTTTAAAAATTTA
GCTAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

78.363

100

0.784

Multiple sequence alignment