Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   Vspart_RS15260 Genome accession   NZ_CP046268
Coordinates   3499934..3500635 (+) Length   233 a.a.
NCBI ID   WP_182287838.1    Uniprot ID   -
Organism   Vibrio spartinae strain 3.6     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3494934..3505635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vspart_RS15240 (Vspart_03150) greB 3495508..3495987 (+) 480 WP_074372969.1 transcription elongation factor GreB -
  Vspart_RS15245 (Vspart_03151) - 3496012..3498321 (+) 2310 WP_182287835.1 Tex family protein -
  Vspart_RS15250 (Vspart_03152) - 3498452..3498928 (-) 477 WP_182287837.1 ATP-dependent Lon protease -
  Vspart_RS15255 (Vspart_03153) bioH 3499079..3499843 (-) 765 WP_074372966.1 pimeloyl-ACP methyl ester esterase BioH -
  Vspart_RS15260 (Vspart_03154) comF 3499934..3500635 (+) 702 WP_182287838.1 phosphoribosyltransferase family protein Machinery gene
  Vspart_RS15265 (Vspart_03155) nfuA 3500719..3501306 (+) 588 WP_074372964.1 Fe-S biogenesis protein NfuA -
  Vspart_RS15270 (Vspart_03156) nudE 3501471..3502049 (+) 579 WP_074372963.1 ADP compounds hydrolase NudE -
  Vspart_RS15275 (Vspart_03157) cysQ 3502046..3502867 (+) 822 WP_074372962.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  Vspart_RS15280 (Vspart_03158) - 3502937..3503707 (-) 771 WP_139302110.1 type II secretion system protein N -
  Vspart_RS15285 (Vspart_03159) - 3503713..3504204 (-) 492 WP_074372960.1 type II secretion system protein M -
  Vspart_RS15290 (Vspart_03160) gspL 3504214..3505425 (-) 1212 WP_074372959.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26840.35 Da        Isoelectric Point: 8.7392

>NTDB_id=402172 Vspart_RS15260 WP_182287838.1 3499934..3500635(+) (comF) [Vibrio spartinae strain 3.6]
MLLQRIQHAVRHRTPRLCALCELPLTAWDHHWCASCLTYFQSTPRCTRCGLSMPFPTDRCGTCLQSPPLWNALYCLGDYA
YPLAPMIHQIKYGRQFWLIPPLAALLAQVIPSPAPLLLPVPLHWRRYLYRGFNQSDLLAHHLSQALSVSYQTKLLQRIRS
TPPQEGLHKNEREQNLRKAFMLRNRPSAKHIAIVDDVVTTGSTISQLCQLLLEVGVEYIDIYCLCRTPEYHNQ

Nucleotide


Download         Length: 702 bp        

>NTDB_id=402172 Vspart_RS15260 WP_182287838.1 3499934..3500635(+) (comF) [Vibrio spartinae strain 3.6]
ATGTTATTGCAACGCATTCAACACGCTGTCCGTCACCGTACCCCCCGATTATGCGCGCTCTGTGAGTTACCATTAACTGC
TTGGGACCATCACTGGTGTGCCAGCTGCCTGACATACTTTCAATCAACACCCCGTTGTACACGATGCGGTTTATCGATGC
CATTCCCAACGGACCGATGCGGCACTTGCCTTCAGTCCCCGCCACTGTGGAACGCGCTCTATTGCCTTGGTGATTATGCC
TACCCATTGGCACCCATGATTCACCAAATCAAATACGGACGCCAGTTCTGGCTTATACCGCCTCTCGCTGCGCTTTTGGC
GCAGGTCATCCCTTCCCCTGCACCACTGCTACTGCCGGTTCCCCTACACTGGCGACGTTATCTTTATCGCGGGTTCAATC
AGAGTGACTTACTGGCACACCATCTCAGTCAAGCGCTGTCAGTGAGCTATCAAACCAAACTGTTACAACGAATTCGTTCA
ACGCCACCGCAAGAAGGTCTGCATAAAAATGAAAGAGAACAGAATCTGAGAAAAGCGTTTATGTTACGCAACCGCCCCTC
AGCCAAACATATTGCGATCGTTGATGATGTGGTGACAACAGGTAGTACCATCAGTCAATTATGCCAATTATTACTTGAAG
TCGGCGTCGAATACATTGATATTTATTGCTTATGCAGAACTCCTGAATATCACAACCAATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(138-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

56.338

91.416

0.515
  comF Vibrio campbellii strain DS40M4

46.186

100

0.468

Multiple sequence alignment