Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   GLS60_RS06610 Genome accession   NZ_CP046243
Coordinates   1295896..1296624 (+) Length   242 a.a.
NCBI ID   WP_041570288.1    Uniprot ID   A0A7U8A6E3
Organism   Campylobacter lari strain SCHS02     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1290896..1301624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GLS60_RS06590 (GLS60_06585) - 1290899..1292278 (+) 1380 WP_070256779.1 methyl-accepting chemotaxis protein -
  GLS60_RS06595 (GLS60_06590) lon 1292290..1294668 (-) 2379 WP_070256782.1 endopeptidase La -
  GLS60_RS06600 (GLS60_06595) bamD 1294668..1295324 (-) 657 WP_012661667.1 outer membrane protein assembly factor BamD -
  GLS60_RS06605 (GLS60_06600) fliW 1295501..1295896 (+) 396 WP_012661666.1 flagellar assembly protein FliW -
  GLS60_RS06610 (GLS60_06605) proC 1295896..1296624 (+) 729 WP_041570288.1 pyrroline-5-carboxylate reductase Machinery gene
  GLS60_RS06615 (GLS60_06610) - 1296621..1296917 (+) 297 WP_012661664.1 hypothetical protein -
  GLS60_RS06620 (GLS60_06615) - 1296901..1297629 (+) 729 WP_070256784.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  GLS60_RS06625 (GLS60_06620) - 1297626..1298048 (+) 423 WP_070256786.1 hypothetical protein -
  GLS60_RS06630 (GLS60_06625) - 1298030..1298671 (-) 642 WP_012661661.1 MarC family protein -
  GLS60_RS06635 (GLS60_06630) rpsR 1298723..1298983 (-) 261 WP_012661660.1 30S ribosomal protein S18 -
  GLS60_RS06640 (GLS60_06635) - 1298994..1299521 (-) 528 WP_070256788.1 single-stranded DNA-binding protein -
  GLS60_RS06645 (GLS60_06640) rpsF 1299525..1299899 (-) 375 WP_012661658.1 30S ribosomal protein S6 -
  GLS60_RS06650 (GLS60_06645) - 1299991..1300956 (-) 966 WP_070256790.1 DNA polymerase III subunit delta -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 26473.71 Da        Isoelectric Point: 7.2137

>NTDB_id=401868 GLS60_RS06610 WP_041570288.1 1295896..1296624(+) (proC) [Campylobacter lari strain SCHS02]
MSEIYILGNGAMASAIAKGIGDAYEVIIVARDLKKASSLNFKVISYNEFDMDNKNIILAFKPYALEEVAVKLKGKARWLI
SVLANTTFEQLHCIDAQNYIKIMPNTAAQFKASATAYLMENDLYKDEILSLLSTFGKAISLQNEKEFDIAMVLSGCAPAF
LALVAESLANAGVKNGLKNELSYELTRASFESFGALFNHIHPAIIKEKICSPAGVTIRGVEALEKRALRGAFFEAFNASL
NK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=401868 GLS60_RS06610 WP_041570288.1 1295896..1296624(+) (proC) [Campylobacter lari strain SCHS02]
ATGTCTGAAATTTATATTTTAGGAAATGGTGCTATGGCTAGTGCTATAGCAAAAGGTATAGGTGATGCTTATGAGGTGAT
AATAGTTGCAAGAGATTTAAAAAAGGCAAGTAGTTTGAATTTCAAAGTCATATCATACAATGAGTTTGATATGGATAATA
AAAATATTATTTTGGCTTTTAAACCTTATGCGTTAGAAGAAGTAGCTGTTAAATTAAAAGGCAAGGCAAGATGGCTTATT
TCAGTTTTAGCAAATACTACTTTTGAGCAACTTCATTGTATTGATGCACAAAATTATATAAAAATTATGCCAAATACAGC
AGCCCAATTTAAAGCCTCAGCGACTGCGTATTTGATGGAAAATGATTTATATAAAGACGAAATTTTATCATTGCTAAGTA
CTTTTGGTAAAGCTATAAGTTTACAAAATGAAAAAGAATTTGATATAGCTATGGTTTTGAGTGGTTGTGCTCCTGCGTTT
TTGGCTTTGGTAGCAGAAAGTTTAGCTAATGCGGGTGTGAAAAATGGTTTAAAAAATGAGCTTAGCTATGAGCTTACTCG
CGCAAGTTTTGAAAGCTTTGGTGCTTTATTTAACCATATACATCCTGCTATTATTAAAGAAAAAATTTGTTCTCCGGCAG
GGGTGACTATAAGAGGGGTTGAGGCTTTAGAAAAAAGAGCTTTGCGTGGTGCTTTTTTTGAAGCTTTTAATGCAAGTTTA
AATAAATGA

Domains

Predicted by InterproScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(144-241)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-84)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U8A6E3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

57.741

98.76

0.57

Multiple sequence alignment