Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   GKO36_RS08240 Genome accession   NZ_CP046145
Coordinates   1649113..1649892 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain PEBA20     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1644113..1654892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKO36_RS08220 (GKO36_08205) trmFO 1644800..1646107 (+) 1308 WP_014417766.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  GKO36_RS08225 (GKO36_08210) xerC 1646177..1647094 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  GKO36_RS08230 (GKO36_08215) hslV 1647110..1647655 (+) 546 WP_014417767.1 ATP-dependent protease subunit HslV -
  GKO36_RS08235 (GKO36_08220) hslU 1647663..1649075 (+) 1413 WP_254894347.1 HslU--HslV peptidase ATPase subunit -
  GKO36_RS08240 (GKO36_08225) codY 1649113..1649892 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  GKO36_RS08245 (GKO36_08230) flgB 1650246..1650635 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  GKO36_RS08250 (GKO36_08235) flgC 1650635..1651087 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  GKO36_RS08255 (GKO36_08240) fliE 1651098..1651418 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  GKO36_RS08260 (GKO36_08245) fliF 1651461..1653071 (+) 1611 WP_014417768.1 flagellar basal-body MS-ring/collar protein FliF -
  GKO36_RS08265 (GKO36_08250) fliG 1653084..1654100 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  GKO36_RS08270 (GKO36_08255) fliH 1654093..1654848 (+) 756 WP_014417769.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=401625 GKO36_RS08240 WP_003154263.1 1649113..1649892(+) (codY) [Bacillus velezensis strain PEBA20]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=401625 GKO36_RS08240 WP_003154263.1 1649113..1649892(+) (codY) [Bacillus velezensis strain PEBA20]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATCACGC
GTTCAGTCATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment