Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   HUK78_RS27795 Genome accession   NZ_CP054794
Coordinates   5959166..5959690 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain A0002     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5954166..5964690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUK78_RS27780 (HUK78_27770) aroB 5955282..5956388 (-) 1107 WP_003112148.1 3-dehydroquinate synthase -
  HUK78_RS27785 (HUK78_27775) aroK 5956438..5956956 (-) 519 WP_003095833.1 shikimate kinase AroK -
  HUK78_RS27790 (HUK78_27780) pilQ 5956968..5959112 (-) 2145 WP_015503770.1 type 4a pilus secretin PilQ Machinery gene
  HUK78_RS27795 (HUK78_27785) comL/pilP 5959166..5959690 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  HUK78_RS27800 (HUK78_27790) pilO 5959687..5960310 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  HUK78_RS27805 (HUK78_27795) pilN 5960307..5960903 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  HUK78_RS27810 (HUK78_27800) pilM 5960903..5961967 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  HUK78_RS27815 (HUK78_27805) - 5962152..5964623 (+) 2472 WP_023518163.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=401575 HUK78_RS27795 WP_003095836.1 5959166..5959690(-) (comL/pilP) [Pseudomonas aeruginosa strain A0002]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=401575 HUK78_RS27795 WP_003095836.1 5959166..5959690(-) (comL/pilP) [Pseudomonas aeruginosa strain A0002]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362