Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   GKC27_RS07845 Genome accession   NZ_CP046130
Coordinates   1576152..1576931 (+) Length   259 a.a.
NCBI ID   WP_003210838.1    Uniprot ID   -
Organism   Bacillus pumilus strain DSM 27     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1571152..1581931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKC27_RS07825 (GKC27_07740) trmFO 1571856..1573160 (+) 1305 WP_003212444.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  GKC27_RS07830 (GKC27_07745) xerC 1573223..1574140 (+) 918 WP_003211704.1 tyrosine recombinase XerC -
  GKC27_RS07835 (GKC27_07750) hslV 1574155..1574700 (+) 546 WP_003211247.1 ATP-dependent protease subunit HslV -
  GKC27_RS07840 (GKC27_07755) hslU 1574717..1576117 (+) 1401 WP_003211907.1 HslU--HslV peptidase ATPase subunit -
  GKC27_RS07845 (GKC27_07760) codY 1576152..1576931 (+) 780 WP_003210838.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  GKC27_RS07850 (GKC27_07765) flgB 1577220..1577609 (+) 390 WP_012009952.1 flagellar basal body rod protein FlgB -
  GKC27_RS07855 (GKC27_07770) flgC 1577609..1578061 (+) 453 WP_003212391.1 flagellar basal body rod protein FlgC -
  GKC27_RS07860 (GKC27_07775) fliE 1578073..1578390 (+) 318 WP_003212183.1 flagellar hook-basal body complex protein FliE -
  GKC27_RS07865 (GKC27_07780) fliF 1578440..1580032 (+) 1593 WP_034619909.1 flagellar basal-body MS-ring/collar protein FliF -
  GKC27_RS07870 (GKC27_07785) fliG 1580044..1581060 (+) 1017 WP_003210883.1 flagellar motor switch protein FliG -
  GKC27_RS07875 (GKC27_07790) fliH 1581053..1581817 (+) 765 WP_003212485.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29060.31 Da        Isoelectric Point: 4.6614

>NTDB_id=401439 GKC27_RS07845 WP_003210838.1 1576152..1576931(+) (codY) [Bacillus pumilus strain DSM 27]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENPRMKKMLEDRQFPEEYTKSLF
NIPETSSNLDINSEYTAFPIENRDLFESGLTTIVPIIGGGDRLGTLILSRLQDTFKDDDLILAEYGATVVGMEILREKSE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=401439 GKC27_RS07845 WP_003210838.1 1576152..1576931(+) (codY) [Bacillus pumilus strain DSM 27]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTTAAGGAAAT
GGCAGAAACGTTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTAGGCTACTCGATCA
ACCAGCAGATTGAAAATCCGCGTATGAAAAAAATGCTTGAAGACCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTT
AACATCCCTGAAACATCTTCAAATCTTGACATTAACAGTGAGTATACAGCTTTCCCGATTGAGAACCGTGATTTATTTGA
ATCAGGTTTGACAACCATTGTTCCAATTATCGGAGGAGGAGATCGTTTAGGGACGTTAATCCTGTCTCGTTTGCAAGATA
CATTCAAAGATGATGATTTAATTCTTGCTGAATACGGTGCAACAGTTGTTGGAATGGAGATCCTTCGTGAGAAATCAGAG
GAAATCGAAGAAGAAGCAAGAAGTAAAGCTGTTGTCCAAATGGCGATTAGTTCTCTTTCATATAGTGAGCTTGAAGCCAT
TGAGCACATCTTTGAAGAACTTGATGGCAACGAAGGGCTTCTAGTGGCAAGTAAAATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTGAACGCCTTACGTAAGTTAGAAAGTGCAGGCGTCATCGAATCTCGTTCTCTTGGAATGAAGGGAACG
TATATCAAAGTGTTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

95.367

100

0.954
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment