Detailed information NTG0040139

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: SSAL_RS01230
• Genome accession: NC_017594
• Coordinates: 222995..225499 (-)
• Length: 834 a.a.
• NCBI ID: WP_014632587.1
• Uniprot ID: -
• Organism: Streptococcus salivarius 57.I
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 217995..230499

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SSAL_RS01200 (Ssal_00239)	-	219281..219511 (-)	231	WP_002884752.1	DNA-dependent RNA polymerase subunit epsilon	-
SSAL_RS01205 (Ssal_00240)	tsaB	219772..220458 (+)	687	WP_014632582.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
SSAL_RS01210 (Ssal_00241)	rimI	220418..220873 (+)	456	WP_045001411.1	ribosomal protein S18-alanine N-acetyltransferase	-
SSAL_RS01215 (Ssal_00242)	tsaD	220873..221886 (+)	1014	WP_014632584.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-
SSAL_RS01220 (Ssal_00243)	-	221938..222630 (+)	693	WP_045001417.1	AzlC family ABC transporter permease	-
SSAL_RS01225 (Ssal_00244)	-	222617..222943 (+)	327	WP_037598482.1	AzlD domain-containing protein	-
SSAL_RS01230 (Ssal_00246)	recD/recD2/recDB	222995..225499 (-)	2505	WP_014632587.1	ATP-dependent RecD-like DNA helicase	Machinery gene
SSAL_RS01235 (Ssal_00248)	lepB	225560..226201 (-)	642	WP_014632588.1	signal peptidase I	-
SSAL_RS01240 (Ssal_00249)	rnhC	226220..227110 (-)	891	WP_045001420.1	ribonuclease HIII	-
SSAL_RS01245 (Ssal_00250)	-	227427..227741 (+)	315	WP_004183554.1	hypothetical protein	-
SSAL_RS01250 (Ssal_00251)	-	227738..228280 (+)	543	WP_002884677.1	CvpA family protein	-

Sequence

Protein

• Length: 834 a.a.
• Molecular weight: 93901.28 Da
• Isoelectric Point: 4.5154

>NTDB_id=40139 SSAL_RS01230 WP_014632587.1 222995..225499(-) (recD/recD2/recDB) [Streptococcus salivarius 57.I]
MQEFYFSGTIERVIFENASNFFRILLLEIDETDSDFEDYEIIVTGTMGDVMEGEDYTFWGQLTNHPKYGEQLQMTRYERS
KPSASGLIKYFSSDNFKGIGKKTAERIVEIYGEDPIDKILEDPSKLEQIPNLSKVNREAFVAKLKINYGTEQILSKLSSY
GLTPKAASQIFNQYKEESLNLIEEHPYLLVEEVQGIGFKIADQLAERLGIASDAPERLRAALIHCLLEASMEEGDTYIEA
KALLERTIILLESARQIELDPALVANQLTNLIQEDKVQNVETKIFDNTLYFAEQGIYTHLTRIMKDQPDISAEDKIQASL
EEVEEELGITYDKVQKDAIIKALQSKVFILTGGPGTGKTTVINGIIKTYADLHGLDLKKSDLPIILAAPTGRAARRMNEL
TQLPSATIHRHLGLNSEDDFKTLEDYLDCDLIIIDEFSMVDTWLANQLFESISDSTQVIIVGDQDQLPSVGPGQVLADLL
QIDNLPKVSLTKIFRQSEDSTIVTLASRMRQGQLPADFTEKKADRSYFEANANHIPQMVPKIVSAAIKSGIAAQDVQILA
PMYRGQAGINNLNTIMQDLLNPQEKANQFAFNDIFFRKNDKILHLVNDTELNVFNGDIGIITDLIPGKYTESKQDEIYMS
FDGNEVIYPRNEWNKITLAYAMSIHKSQGSEFPVVILPITRQSGRMLQRNLIYTAITRAKSKLVMLGEIAAFDYAVRNEG
AKRNTYLIQRFKQTYTQAVDKSVEKIVKNEATDVSNQTKKENNGSSEPLENKDISGNINPSPTLINTYSQPVDKSVNKPV
QTEENYRLTEDNWSTIDPMIGLSEDDIAAFFNNN

Nucleotide

• Length: 2505 bp

>NTDB_id=40139 SSAL_RS01230 WP_014632587.1 222995..225499(-) (recD/recD2/recDB) [Streptococcus salivarius 57.I]
ATGCAAGAATTTTATTTTTCAGGAACTATCGAACGCGTCATTTTCGAAAACGCTAGTAATTTTTTCCGTATTCTACTCTT
AGAAATTGACGAAACAGACAGTGATTTTGAGGACTATGAAATCATTGTTACAGGAACCATGGGAGATGTCATGGAAGGTG
AAGATTATACCTTCTGGGGTCAGCTAACCAATCATCCAAAATATGGTGAACAACTCCAAATGACACGCTACGAACGGTCA
AAACCTTCTGCCAGCGGTCTTATCAAGTATTTCTCTAGCGACAATTTTAAGGGGATTGGTAAGAAAACAGCTGAGCGTAT
TGTCGAGATTTATGGTGAAGACCCTATTGACAAGATTCTCGAGGATCCTAGCAAGTTAGAACAGATTCCTAACCTTTCAA
AGGTAAACCGAGAAGCCTTCGTTGCAAAGTTAAAAATCAACTATGGAACCGAGCAAATCTTGTCCAAACTTTCCAGCTAT
GGACTCACACCAAAAGCTGCCTCACAAATTTTCAACCAATATAAGGAAGAATCGCTCAATCTTATCGAAGAACACCCTTA
TCTCTTGGTAGAGGAAGTTCAAGGAATCGGATTTAAAATAGCTGACCAACTAGCCGAACGCTTAGGAATTGCTAGTGATG
CTCCTGAGCGCTTACGAGCTGCCTTGATTCATTGTCTGCTAGAAGCCAGTATGGAAGAAGGCGACACCTACATCGAAGCC
AAAGCTTTGCTCGAACGAACTATCATCCTTTTGGAAAGTGCTCGTCAAATTGAACTTGACCCTGCCTTGGTCGCTAACCA
ATTAACCAATCTCATCCAAGAGGACAAGGTGCAAAATGTAGAGACTAAAATCTTTGATAATACCCTTTATTTTGCGGAAC
AGGGCATCTATACCCACCTAACTCGTATCATGAAAGACCAACCTGACATCAGTGCAGAGGACAAAATCCAAGCAAGTCTT
GAAGAGGTGGAAGAGGAGCTTGGTATTACTTATGATAAGGTGCAAAAAGACGCCATTATCAAAGCCCTACAAAGCAAGGT
ATTCATCCTGACAGGTGGTCCCGGAACAGGGAAAACCACCGTTATTAACGGCATTATTAAAACCTATGCTGACCTTCATG
GTCTAGATCTCAAAAAGTCTGATTTGCCTATTATTTTAGCGGCGCCAACGGGACGGGCTGCTCGTCGAATGAACGAACTC
ACCCAACTCCCTAGCGCCACTATCCATAGACATCTGGGCCTCAATAGCGAGGACGATTTCAAGACCTTAGAGGACTATCT
CGATTGCGACTTGATTATCATCGATGAGTTTTCTATGGTTGATACTTGGTTGGCTAATCAACTTTTTGAAAGTATCTCTG
ATTCAACCCAAGTCATCATTGTGGGTGACCAAGACCAACTGCCTTCCGTAGGCCCTGGCCAAGTCTTGGCTGACCTTTTG
CAGATTGATAACTTGCCAAAGGTTTCCCTAACCAAAATTTTCAGACAATCCGAGGACTCCACCATCGTTACCCTGGCTAG
TCGGATGCGCCAAGGCCAACTACCCGCTGATTTCACAGAGAAAAAGGCTGACCGCTCTTACTTTGAGGCCAATGCCAACC
ATATTCCACAGATGGTTCCTAAAATTGTCTCTGCCGCTATAAAGAGCGGGATCGCTGCTCAGGATGTGCAGATTCTAGCT
CCCATGTATCGAGGACAGGCTGGTATTAACAATCTCAATACCATTATGCAGGACCTACTTAATCCTCAAGAAAAGGCCAA
TCAGTTTGCCTTTAATGATATTTTCTTCCGTAAGAACGACAAAATTCTCCATCTGGTCAACGATACCGAACTCAATGTCT
TCAATGGCGACATCGGCATCATTACCGATCTCATCCCTGGTAAATATACTGAAAGCAAGCAGGACGAAATTTACATGTCC
TTTGATGGCAATGAGGTTATCTATCCTCGTAACGAATGGAATAAGATTACTCTGGCCTATGCCATGTCAATCCACAAATC
TCAAGGGAGTGAGTTCCCAGTCGTTATCCTTCCCATCACACGACAAAGTGGACGTATGCTACAACGTAACCTCATCTACA
CCGCTATCACACGCGCCAAGAGTAAACTAGTCATGTTAGGGGAAATCGCAGCCTTTGATTATGCCGTTCGCAACGAAGGA
GCTAAACGAAATACTTATCTCATCCAACGTTTTAAACAAACTTATACACAAGCTGTTGATAAGTCTGTCGAAAAGATTGT
TAAAAACGAGGCAACAGACGTATCCAATCAAACCAAAAAGGAAAACAACGGATCCTCAGAACCCCTTGAAAACAAAGACA
TTTCGGGAAATATAAATCCATCTCCAACTCTTATTAACACTTATTCACAGCCTGTGGATAAGTCTGTTAACAAACCTGTG
CAAACCGAAGAAAACTATCGTTTAACGGAAGATAATTGGTCAACTATAGATCCAATGATTGGTCTCAGTGAAGACGATAT
TGCTGCCTTTTTTAACAATAACTAA

Domains

Predicted by InterProScan.

• Helix-hairpin-helix containing domain (HHH_RecD2) (147-237)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (659-705)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (572-638)

• AAA domain (AAA_30) (331-523)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	45.248	89.568	0.405