Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   GKC25_RS07510 Genome accession   NZ_CP046128
Coordinates   1517476..1518255 (+) Length   259 a.a.
NCBI ID   WP_034662375.1    Uniprot ID   A0AAE3WK82
Organism   Bacillus pumilus strain V17C11     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1512476..1523255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKC25_RS07490 (GKC25_07420) trmFO 1513180..1514484 (+) 1305 WP_034662383.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  GKC25_RS07495 (GKC25_07425) xerC 1514547..1515464 (+) 918 WP_342689642.1 tyrosine recombinase XerC -
  GKC25_RS07500 (GKC25_07430) hslV 1515479..1516024 (+) 546 WP_003211247.1 ATP-dependent protease subunit HslV -
  GKC25_RS07505 (GKC25_07435) hslU 1516041..1517441 (+) 1401 WP_060596254.1 HslU--HslV peptidase ATPase subunit -
  GKC25_RS07510 (GKC25_07440) codY 1517476..1518255 (+) 780 WP_034662375.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  GKC25_RS07515 (GKC25_07445) flgB 1518543..1518932 (+) 390 WP_012009952.1 flagellar basal body rod protein FlgB -
  GKC25_RS07520 (GKC25_07450) flgC 1518932..1519384 (+) 453 WP_012009953.1 flagellar basal body rod protein FlgC -
  GKC25_RS07525 (GKC25_07455) fliE 1519396..1519713 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  GKC25_RS07530 (GKC25_07460) fliF 1519763..1521355 (+) 1593 WP_034662370.1 flagellar basal-body MS-ring/collar protein FliF -
  GKC25_RS07535 (GKC25_07465) fliG 1521367..1522383 (+) 1017 WP_008344808.1 flagellar motor switch protein FliG -
  GKC25_RS07540 (GKC25_07470) fliH 1522376..1523140 (+) 765 WP_034662367.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29019.22 Da        Isoelectric Point: 4.5971

>NTDB_id=401380 GKC25_RS07510 WP_034662375.1 1517476..1518255(+) (codY) [Bacillus pumilus strain V17C11]
MALLQKTRIINSMLQDSAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENPRMKKMLEDRQFPEEYTKSLF
NIPETSSNLDINSEYTAFPIENRDLFESGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKGE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=401380 GKC25_RS07510 WP_034662375.1 1517476..1518255(+) (codY) [Bacillus pumilus strain V17C11]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATTCAGCAGGGAAACCAGTTAATTTTAAAGAAAT
GGCGGAAACACTGAGAGATGTCATTGATTCAAACATTTTTGTGTTGAGTAGAAGAGGGAAGCTTCTAGGCTACTCGATCA
ACCAGCAGATTGAAAATCCGCGTATGAAGAAAATGCTTGAAGACCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTC
AACATCCCTGAAACATCTTCAAACCTTGACATTAACAGTGAGTATACAGCTTTCCCAATTGAGAACCGTGATTTATTCGA
ATCAGGTTTGACAACCATTGTTCCAATTATCGGAGGAGGAGATCGTTTAGGAACGTTAATCCTGTCTCGTTTGCAAGATA
CATTCACTGATGATGATTTAATACTTGCTGAGTACGGAGCAACAGTTGTTGGAATGGAGATCCTTCGTGAAAAAGGAGAA
GAAATCGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCGATTAGTTCTCTTTCATATAGTGAGCTTGAAGCCAT
TGAGCACATCTTTGAAGAACTTGATGGCAACGAAGGGCTCCTTGTGGCAAGTAAAATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTGAACGCCTTACGTAAGTTAGAAAGTGCAGGTGTCATCGAATCTCGTTCTCTTGGAATGAAGGGAACG
TATATCAAAGTGTTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

94.981

100

0.95
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.425

98.069

0.475

Multiple sequence alignment