Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   GKC22_RS07610 Genome accession   NZ_CP046127
Coordinates   1543683..1544462 (+) Length   259 a.a.
NCBI ID   WP_034662375.1    Uniprot ID   A0AAE3WK82
Organism   Bacillus pumilus strain P48C1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1538683..1549462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKC22_RS07590 (GKC22_07535) trmFO 1539387..1540691 (+) 1305 WP_034662383.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  GKC22_RS07595 (GKC22_07540) xerC 1540754..1541671 (+) 918 WP_342689642.1 tyrosine recombinase XerC -
  GKC22_RS07600 (GKC22_07545) hslV 1541686..1542231 (+) 546 WP_003211247.1 ATP-dependent protease subunit HslV -
  GKC22_RS07605 (GKC22_07550) hslU 1542248..1543648 (+) 1401 WP_060596254.1 HslU--HslV peptidase ATPase subunit -
  GKC22_RS07610 (GKC22_07555) codY 1543683..1544462 (+) 780 WP_034662375.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  GKC22_RS07615 (GKC22_07560) flgB 1544750..1545139 (+) 390 WP_012009952.1 flagellar basal body rod protein FlgB -
  GKC22_RS07620 (GKC22_07565) flgC 1545139..1545591 (+) 453 WP_012009953.1 flagellar basal body rod protein FlgC -
  GKC22_RS07625 (GKC22_07570) fliE 1545603..1545920 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  GKC22_RS07630 (GKC22_07575) fliF 1545970..1547562 (+) 1593 WP_034662370.1 flagellar basal-body MS-ring/collar protein FliF -
  GKC22_RS07635 (GKC22_07580) fliG 1547574..1548590 (+) 1017 WP_008344808.1 flagellar motor switch protein FliG -
  GKC22_RS07640 (GKC22_07585) fliH 1548583..1549347 (+) 765 WP_034662367.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29019.22 Da        Isoelectric Point: 4.5971

>NTDB_id=401318 GKC22_RS07610 WP_034662375.1 1543683..1544462(+) (codY) [Bacillus pumilus strain P48C1]
MALLQKTRIINSMLQDSAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENPRMKKMLEDRQFPEEYTKSLF
NIPETSSNLDINSEYTAFPIENRDLFESGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKGE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=401318 GKC22_RS07610 WP_034662375.1 1543683..1544462(+) (codY) [Bacillus pumilus strain P48C1]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATTCAGCAGGGAAACCAGTTAATTTTAAAGAAAT
GGCGGAAACACTGAGAGATGTCATTGATTCAAACATTTTTGTGTTGAGTAGAAGAGGGAAGCTTCTAGGCTACTCGATCA
ACCAGCAGATTGAAAATCCGCGTATGAAGAAAATGCTTGAAGACCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTC
AACATCCCTGAAACATCTTCAAACCTTGACATTAACAGTGAGTATACAGCTTTCCCAATTGAGAACCGTGATTTATTCGA
ATCAGGTTTGACAACCATTGTTCCAATTATCGGAGGAGGAGATCGTTTAGGAACGTTAATCCTGTCTCGTTTGCAAGATA
CATTCACTGATGATGATTTAATACTTGCTGAGTACGGAGCAACAGTTGTTGGAATGGAGATCCTTCGTGAAAAAGGAGAA
GAAATCGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCGATTAGTTCTCTTTCATATAGTGAGCTTGAAGCCAT
TGAGCACATCTTTGAAGAACTTGATGGCAACGAAGGGCTCCTTGTGGCAAGTAAAATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTGAACGCCTTACGTAAGTTAGAAAGTGCAGGTGTCATCGAATCTCGTTCTCTTGGAATGAAGGGAACG
TATATCAAAGTGTTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

94.981

100

0.95
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.425

98.069

0.475

Multiple sequence alignment