Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   CLOLE_RS12910 Genome accession   NC_015275
Coordinates   2808622..2810466 (-) Length   614 a.a.
NCBI ID   WP_013657565.1    Uniprot ID   F2JHN3
Organism   Cellulosilyticum lentocellum DSM 5427     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2803622..2815466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLOLE_RS12885 (Clole_2564) scfA 2804672..2804809 (-) 138 WP_013657560.1 six-cysteine ranthipeptide SCIFF -
  CLOLE_RS12890 (Clole_2565) - 2804952..2805356 (-) 405 WP_013657561.1 TIGR04086 family membrane protein -
  CLOLE_RS12895 (Clole_2566) - 2805448..2806302 (+) 855 WP_013657562.1 PHP domain-containing protein -
  CLOLE_RS12900 (Clole_2567) - 2806346..2806738 (-) 393 WP_013657563.1 hypothetical protein -
  CLOLE_RS12905 (Clole_2568) - 2806972..2808528 (+) 1557 WP_013657564.1 ABC-F family ATP-binding cassette domain-containing protein -
  CLOLE_RS12910 (Clole_2569) rcrQ 2808622..2810466 (-) 1845 WP_013657565.1 ABC transporter ATP-binding protein Regulator
  CLOLE_RS12915 (Clole_2570) - 2810459..2812192 (-) 1734 WP_013657566.1 ABC transporter ATP-binding protein -
  CLOLE_RS12920 (Clole_2571) - 2812211..2812834 (-) 624 WP_013657567.1 TetR/AcrR family transcriptional regulator -
  CLOLE_RS12925 (Clole_2572) - 2813142..2813648 (-) 507 WP_013657568.1 GNAT family N-acetyltransferase -
  CLOLE_RS12930 (Clole_2573) yidA 2813724..2814530 (-) 807 WP_013657569.1 sugar-phosphatase -
  CLOLE_RS12935 (Clole_2574) - 2814634..2815173 (-) 540 WP_013657570.1 hypothetical protein -

Sequence

Protein


Download         Length: 614 a.a.        Molecular weight: 68149.88 Da        Isoelectric Point: 6.2029

>NTDB_id=40123 CLOLE_RS12910 WP_013657565.1 2808622..2810466(-) (rcrQ) [Cellulosilyticum lentocellum DSM 5427]
MSENKRPRGPMGGHGPMGGMGAGEKADDFKGTMKKLINYLKKYMVGIVVVMIFAIASTVFSIYGPDILGDATDVLVNAVK
IALTGKPLVIDYNRIRDILLLLLALYLLSGVFSYIQGWVMTGISQKVTYKLRNDITEKINRMPLKYFDTHTHGEVLSRIT
NDIDTVSQTLGQSLTQIITSVTTVIGVFIMMLSISWIMTLAALVVIPLSMFFVMGVVKKSQKYFRSQQEYLGHINGHVEE
MYGGHVVVKAFNGEEDSIKQFNAYNETLYHSAWKSQFISGMMMPIMGFIGNLGYVLVCILGGVLAVKNTVSIGDIQAFIQ
YMRNFTQPLSQIASISNTLQSTAAAAERVFAFLDEEEESVESSTPVKLENPEGQVTFENVHFGYNQDKIIINDFSADVKP
GMKVAIVGPTGAGKTTVVKLLMRFYDLQSGKIKIDGHDICDLTRSDLRDLFGMVLQDTWLYNGSIMENIRYGKQDATDEE
VIEAAKAAHVHSFVKTLPDGYRMVLNEEASNVSQGQKQLLTIARAILSDPTILILDEATSSVDTRTEVLIQKAMENLMKG
RTSFIIAHRLSTIRDADLILVMKDGDIIEKGTHEELLKQGTFYAQLYNSQFEAS

Nucleotide


Download         Length: 1845 bp        

>NTDB_id=40123 CLOLE_RS12910 WP_013657565.1 2808622..2810466(-) (rcrQ) [Cellulosilyticum lentocellum DSM 5427]
ATGAGTGAAAATAAAAGACCGAGAGGACCTATGGGTGGACATGGACCTATGGGTGGCATGGGTGCTGGTGAAAAAGCAGA
TGATTTTAAAGGCACCATGAAAAAATTAATCAACTATTTAAAGAAATATATGGTGGGAATTGTAGTGGTTATGATTTTTG
CTATTGCATCTACTGTCTTTTCTATTTATGGACCAGATATTTTAGGAGATGCAACTGATGTGTTAGTAAATGCTGTAAAA
ATAGCTTTAACAGGCAAACCACTTGTAATTGATTATAATAGAATTAGAGATATTTTATTGCTTTTATTAGCATTATATTT
GTTGTCTGGAGTTTTTAGTTACATTCAAGGCTGGGTAATGACAGGTATATCTCAAAAAGTAACTTATAAACTACGTAATG
ATATTACAGAAAAAATTAATCGTATGCCTTTAAAGTATTTCGATACGCATACTCATGGAGAAGTACTTTCACGTATCACT
AATGATATAGATACAGTCAGTCAAACTTTAGGACAAAGTTTGACTCAAATTATTACTTCTGTAACAACCGTTATAGGTGT
TTTTATAATGATGCTTAGTATCAGTTGGATTATGACATTAGCAGCATTAGTAGTTATTCCACTTTCTATGTTCTTTGTGA
TGGGTGTGGTTAAAAAGTCACAAAAATACTTTAGAAGTCAACAAGAATACCTAGGTCATATTAATGGGCATGTAGAAGAA
ATGTATGGGGGGCATGTAGTTGTTAAAGCGTTTAATGGAGAAGAAGATTCCATAAAGCAGTTTAATGCATATAATGAAAC
CCTATATCATTCAGCGTGGAAATCTCAGTTTATATCAGGGATGATGATGCCTATCATGGGCTTTATAGGCAATCTAGGCT
ATGTGCTGGTGTGCATTTTAGGTGGTGTTTTAGCTGTTAAAAATACAGTAAGTATTGGTGATATTCAAGCCTTTATTCAA
TATATGCGTAACTTTACTCAGCCACTTTCACAAATTGCAAGTATTTCAAATACATTACAATCTACAGCAGCAGCTGCTGA
ACGTGTATTTGCCTTTTTAGACGAGGAAGAAGAAAGTGTAGAAAGTAGTACGCCAGTGAAATTAGAAAATCCAGAAGGGC
AAGTTACCTTCGAAAATGTTCATTTTGGATATAATCAAGACAAAATCATTATTAATGACTTCTCAGCTGATGTTAAACCA
GGAATGAAGGTAGCTATTGTAGGGCCTACAGGTGCTGGTAAAACAACAGTCGTGAAGCTATTAATGCGCTTTTATGACTT
ACAATCTGGTAAGATTAAAATTGATGGTCATGATATTTGTGATTTGACAAGAAGTGATTTAAGAGATTTATTTGGTATGG
TACTTCAAGATACGTGGTTGTATAATGGTAGCATTATGGAAAATATACGCTATGGTAAACAAGATGCTACGGATGAAGAA
GTCATTGAAGCAGCCAAAGCAGCTCATGTTCATAGTTTTGTAAAAACCTTACCTGATGGTTACCGCATGGTTTTAAATGA
AGAAGCAAGTAATGTTTCTCAAGGACAAAAGCAACTATTAACCATTGCACGTGCCATTTTATCAGACCCTACAATTCTTA
TTTTAGATGAAGCCACAAGTTCAGTTGATACACGTACAGAAGTGCTTATTCAAAAAGCTATGGAAAACTTAATGAAAGGA
AGAACCAGTTTTATTATTGCTCACCGTTTATCTACGATTCGTGATGCAGACCTTATTTTAGTAATGAAAGATGGTGATAT
TATTGAAAAAGGTACTCATGAAGAACTCCTAAAACAAGGTACTTTCTATGCACAACTTTATAATAGTCAATTTGAAGCTA
GCTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(48-329)

ABC transporter (ABC_tran)

(392-540)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F2JHN3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.199

95.114

0.487

Multiple sequence alignment