Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   HUK70_RS26475 Genome accession   NZ_CP054789
Coordinates   5551668..5552093 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain SE5381     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5546668..5557093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUK70_RS26460 (HUK70_26290) pilX 5547232..5547819 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  HUK70_RS26465 (HUK70_26295) pilY1 5547831..5551322 (+) 3492 WP_010793785.1 type 4a pilus biogenesis protein PilY1 -
  HUK70_RS26470 (HUK70_26300) pilY2 5551324..5551671 (+) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  HUK70_RS26475 (HUK70_26305) comF 5551668..5552093 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  HUK70_RS26480 (HUK70_26310) ispH 5552140..5553084 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  HUK70_RS26485 (HUK70_26315) fkpB 5553170..5553610 (-) 441 WP_003161775.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  HUK70_RS26490 (HUK70_26320) lspA 5553603..5554112 (-) 510 WP_003102615.1 signal peptidase II -
  HUK70_RS26495 (HUK70_26325) ileS 5554105..5556936 (-) 2832 WP_003102617.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=401067 HUK70_RS26475 WP_003094721.1 5551668..5552093(+) (comF) [Pseudomonas aeruginosa strain SE5381]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=401067 HUK70_RS26475 WP_003094721.1 5551668..5552093(+) (comF) [Pseudomonas aeruginosa strain SE5381]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGGCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383