Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GJV56_RS12310 Genome accession   NZ_CP046080
Coordinates   2689659..2690312 (-) Length   217 a.a.
NCBI ID   WP_154492359.1    Uniprot ID   -
Organism   Elizabethkingia anophelis strain 296-96     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2684659..2695312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJV56_RS12280 (GJV56_12280) - 2684740..2685399 (-) 660 WP_021348851.1 DUF4290 domain-containing protein -
  GJV56_RS12285 (GJV56_12285) - 2685475..2685894 (-) 420 WP_024564901.1 thiol-disulfide oxidoreductase DCC family protein -
  GJV56_RS12290 (GJV56_12290) - 2685902..2686381 (-) 480 WP_024564900.1 heme-binding domain-containing protein -
  GJV56_RS12295 (GJV56_12295) der 2686609..2687919 (+) 1311 WP_009087927.1 ribosome biogenesis GTPase Der -
  GJV56_RS12300 (GJV56_12300) - 2688039..2688893 (-) 855 WP_086982330.1 phospholipase -
  GJV56_RS12305 (GJV56_12305) upp 2689003..2689653 (+) 651 WP_009087924.1 uracil phosphoribosyltransferase -
  GJV56_RS12310 (GJV56_12310) comF 2689659..2690312 (-) 654 WP_154492359.1 ComF family protein Machinery gene
  GJV56_RS12315 (GJV56_12315) - 2690334..2691839 (-) 1506 WP_154492361.1 helix-turn-helix domain-containing protein -
  GJV56_RS12320 (GJV56_12320) aceB 2691919..2693484 (+) 1566 WP_154492363.1 malate synthase A -
  GJV56_RS12325 (GJV56_12325) aceA 2693523..2694797 (+) 1275 WP_087093975.1 isocitrate lyase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25203.31 Da        Isoelectric Point: 8.9780

>NTDB_id=400965 GJV56_RS12310 WP_154492359.1 2689659..2690312(-) (comF) [Elizabethkingia anophelis strain 296-96]
MNFFTDILFPNRCLQCNHIIDGKDIICEGCYDQVDFTHWESLPKTLLQQKLCSLFPVENSYALMNFEKDGLSRKLIHNLK
YANREIVGDTLARWTAEKINLKSKPDILINIPLHAKKLKKRGYNQLHRFTETLSKEWDIPYNHHYLKRTAYSTAQARKKL
KQRKENINIFIVPNPLENIHFLLIDDVCTTGSTLASCAWEILKTPGNKLSVLVMAID

Nucleotide


Download         Length: 654 bp        

>NTDB_id=400965 GJV56_RS12310 WP_154492359.1 2689659..2690312(-) (comF) [Elizabethkingia anophelis strain 296-96]
ATGAATTTCTTTACAGATATATTATTTCCAAACCGTTGCCTTCAATGCAATCACATTATTGACGGAAAAGATATTATTTG
TGAAGGATGTTATGATCAGGTAGATTTTACCCATTGGGAATCATTACCGAAGACACTATTGCAACAGAAATTATGTTCTC
TTTTCCCTGTTGAGAATTCTTATGCTTTGATGAATTTTGAGAAAGATGGCCTTAGCAGAAAATTAATCCACAATCTCAAA
TATGCTAATCGCGAGATTGTAGGAGATACATTGGCCCGATGGACAGCGGAAAAAATAAATCTAAAATCAAAACCCGATAT
ACTGATTAATATTCCGTTACATGCCAAGAAACTAAAAAAACGGGGATATAATCAGCTGCATCGCTTTACAGAAACATTAT
CAAAGGAATGGGATATTCCATATAATCATCATTATTTAAAAAGGACAGCTTACAGCACTGCTCAAGCCAGAAAAAAATTG
AAACAAAGAAAGGAGAACATCAATATATTCATAGTTCCTAATCCCCTTGAAAACATTCATTTTCTTCTTATTGATGATGT
ATGTACTACAGGAAGTACTTTAGCTTCGTGTGCATGGGAGATACTAAAAACGCCCGGCAATAAGCTGAGCGTTTTAGTTA
TGGCAATTGATTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

48.837

99.078

0.484

Multiple sequence alignment