Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   HUK69_RS15865 Genome accession   NZ_CP054788
Coordinates   3355357..3356082 (+) Length   241 a.a.
NCBI ID   WP_003117927.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain YTSY4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3350357..3361082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUK69_RS15835 (HUK69_15820) - 3350477..3351355 (-) 879 WP_023081616.1 5-oxoprolinase subunit B family protein -
  HUK69_RS15840 (HUK69_15825) - 3351357..3352733 (-) 1377 WP_003113254.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  HUK69_RS15845 (HUK69_15830) - 3352744..3352992 (-) 249 WP_003084813.1 acetyl-CoA carboxylase -
  HUK69_RS15850 (HUK69_15835) - 3353069..3353827 (-) 759 WP_003103315.1 5-oxoprolinase subunit PxpA -
  HUK69_RS15855 (HUK69_15840) - 3353945..3354871 (+) 927 WP_003118849.1 LysR family transcriptional regulator -
  HUK69_RS15860 (HUK69_15845) - 3354925..3355218 (+) 294 WP_023086814.1 hypothetical protein -
  HUK69_RS15865 (HUK69_15850) comF 3355357..3356082 (+) 726 WP_003117927.1 ComF family protein Machinery gene
  HUK69_RS15870 (HUK69_15855) - 3356124..3356444 (+) 321 WP_003103307.1 YfiM family lipoprotein -
  HUK69_RS15875 (HUK69_15860) - 3356512..3357270 (+) 759 WP_003103305.1 TOBE domain-containing protein -
  HUK69_RS15880 (HUK69_15865) - 3357332..3358306 (+) 975 WP_003084794.1 serine/threonine protein kinase -
  HUK69_RS15885 (HUK69_15870) rarD 3358509..3359405 (+) 897 WP_003103301.1 EamA family transporter RarD -
  HUK69_RS15890 (HUK69_15875) - 3360095..3360610 (-) 516 WP_003084789.1 glycine cleavage system protein R -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27062.56 Da        Isoelectric Point: 11.2212

>NTDB_id=400928 HUK69_RS15865 WP_003117927.1 3355357..3356082(+) (comF) [Pseudomonas aeruginosa strain YTSY4]
MSFPLRPLTRWLLPPPACLLCAARSDQPARPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAERLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=400928 HUK69_RS15865 WP_003117927.1 3355357..3356082(+) (comF) [Pseudomonas aeruginosa strain YTSY4]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGGCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTACCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCTCGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTGGACCTGCGCTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGGCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGCGCCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.017

100

0.382