Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   SPNINV200_RS08575 Genome accession   NC_017593
Coordinates   1641516..1642787 (+) Length   423 a.a.
NCBI ID   WP_001113218.1    Uniprot ID   -
Organism   Streptococcus pneumoniae INV200     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1636516..1647787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPNINV200_RS08535 (SPNINV200_16060) - 1636707..1637741 (-) 1035 WP_000747915.1 ATP-binding protein -
  SPNINV200_RS08540 - 1637860..1638009 (-) 150 Protein_1613 7,8-dihydro-8-oxoguanine-triphosphatase -
  SPNINV200_RS08545 (SPNINV200_16070) - 1638011..1639078 (-) 1068 WP_000719723.1 site-2 protease family protein -
  SPNINV200_RS08550 (SPNINV200_16080) - 1639097..1639567 (-) 471 WP_000257084.1 DUF3013 family protein -
  SPNINV200_RS08555 (SPNINV200_16090) - 1639858..1640310 (-) 453 WP_000961810.1 type II toxin-antitoxin system HicB family antitoxin -
  SPNINV200_RS08560 - 1640347..1640526 (-) 180 WP_001132285.1 type II toxin-antitoxin system HicA family toxin -
  SPNINV200_RS08565 (SPNINV200_16100) - 1640663..1640842 (-) 180 WP_001048906.1 hypothetical protein -
  SPNINV200_RS08570 (SPNINV200_16110) - 1641007..1641246 (-) 240 WP_000818078.1 hypothetical protein -
  SPNINV200_RS08575 (SPNINV200_16120) rarA 1641516..1642787 (+) 1272 WP_001113218.1 replication-associated recombination protein A Machinery gene
  SPNINV200_RS08585 (SPNINV200_16130) - 1643334..1644653 (-) 1320 WP_000502558.1 glycoside hydrolase family 32 protein -
  SPNINV200_RS08590 (SPNINV200_16140) - 1644663..1646279 (-) 1617 WP_000669745.1 ABC transporter substrate-binding protein -
  SPNINV200_RS08595 (SPNINV200_16150) - 1646308..1647198 (-) 891 WP_000797961.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46968.49 Da        Isoelectric Point: 6.2424

>NTDB_id=40072 SPNINV200_RS08575 WP_001113218.1 1641516..1642787(+) (rarA) [Streptococcus pneumoniae INV200]
MPDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKEALQ
IALSNPERGFDFPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDKGIRHITLDIMENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVDASLHYAARLIEAGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALDAAQKIGFPEARILIANVV
IDLALSPKSNSAYVAMDKALADLKTSGHLPIPRHLRDGHYSGSKELGNAQDYLYPHNYPGNWVKQDYLPEKIRNHHYFQA
EDTGKYERALAQRKEAIDRLRKI

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=40072 SPNINV200_RS08575 WP_001113218.1 1641516..1642787(+) (rarA) [Streptococcus pneumoniae INV200]
ATGCCAGACAATCTCGCGCTTCGCATGCGCCCTAAAACCATCGACCAGGTCATCGGTCAGGAGCATCTGGTCGGACCTGG
AAAAATCATCCGCCGCATGGTGGAAGCCAACCGCCTGTCCTCCATGATTCTATATGGCCCTCCGGGAATCGGCAAAACCA
GTATTGCCTCTGCCATCGCTGGAACGACCAAGTATGCCTTTCGAACTTTCAATGCGACAGTTGATAGTAAAAAGCGACTG
CAAGAAATCTCGGAAGAAGCTAAATTTTCTGGTGGTCTCGTCCTATTGCTAGACGAAATTCATCGACTAGATAAGACCAA
GCAAGACTTCCTCTTGCCTCTCTTGGAAAGTGGACTGGTCATCATGATTGGAGCAACGACTGAAAATCCTTTCTTTTCCG
TCACTCCTGCCATTCGTAGCCGTGTTCAAATTTTTGAGTTGGAACCTCTGTCTAACCAAGACGTCAAAGAGGCCCTGCAG
ATAGCTCTAAGTAACCCTGAACGTGGTTTTGATTTTCCAATAGAACTAGATGAGGATGCGCTGGATTTCATCGCAACCTC
TACAAACGGAGACCTTCGCTCTGCCTTTAACTCACTGGACTTGGCTGTTCTCTCTACCCCTGAGAATGACAAGGGCATTC
GCCACATCACCTTAGACATCATGGAAAATAGTCTTCAGAGAAGCTACATCACTATGGACAAGGATGGAGACGGTCACTAT
GATGTTCTATCTGCCCTGCAAAAGTCTATCCGTGGCTCAGATGTGGATGCCAGTCTCCACTATGCTGCCCGCTTGATTGA
GGCTGGGGATCTGCCTAGTCTCGCTCGTCGCTTGACTGTTATCGCCTATGAAGATATCGGCTTAGCCAATCCTGAGGCCC
AGATTCATACCGTGACTGCTCTGGATGCTGCCCAGAAGATTGGGTTTCCAGAAGCCCGCATTCTCATTGCCAATGTCGTG
ATTGATTTGGCCCTTTCTCCAAAATCCAACTCAGCCTATGTAGCTATGGATAAGGCACTTGCTGACCTCAAAACATCAGG
GCACTTGCCTATTCCGCGACACCTACGTGATGGGCACTACAGTGGAAGCAAGGAACTGGGGAATGCCCAAGACTATCTCT
ATCCACACAACTATCCTGGAAATTGGGTAAAGCAAGACTATCTGCCAGAAAAAATTCGTAATCATCACTATTTCCAAGCA
GAAGATACTGGTAAATATGAACGGGCTTTGGCTCAAAGAAAGGAAGCTATCGACCGTTTGCGAAAAATCTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

57.518

99.054

0.57