Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   GJS34_RS04375 Genome accession   NZ_CP046042
Coordinates   908065..908943 (+) Length   292 a.a.
NCBI ID   WP_014622727.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain TN-714097     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 903065..913943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJS34_RS04345 (GJS34_04350) - 903258..904133 (+) 876 WP_012515431.1 F0F1 ATP synthase subunit gamma -
  GJS34_RS04350 (GJS34_04355) atpD 904301..905707 (+) 1407 WP_014622723.1 F0F1 ATP synthase subunit beta -
  GJS34_RS04355 (GJS34_04360) - 905720..906136 (+) 417 WP_014622724.1 F0F1 ATP synthase subunit epsilon -
  GJS34_RS04360 (GJS34_04365) - 906270..906506 (+) 237 WP_012678109.1 DUF1146 family protein -
  GJS34_RS04365 (GJS34_04370) murA 906570..907841 (+) 1272 WP_038674827.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  GJS34_RS04370 (GJS34_04375) - 907845..908033 (+) 189 WP_012678107.1 DNA-directed RNA polymerase subunit beta -
  GJS34_RS04375 (GJS34_04380) endA 908065..908943 (+) 879 WP_014622727.1 DNA/RNA non-specific endonuclease Machinery gene
  GJS34_RS10425 - 908957..909115 (+) 159 WP_014622728.1 hypothetical protein -
  GJS34_RS04380 (GJS34_04385) pheS 909855..910898 (+) 1044 WP_012678105.1 phenylalanine--tRNA ligase subunit alpha -
  GJS34_RS04385 (GJS34_04395) pheT 911088..913493 (+) 2406 WP_014622731.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 31840.94 Da        Isoelectric Point: 10.2312

>NTDB_id=400584 GJS34_RS04375 WP_014622727.1 908065..908943(+) (endA) [Streptococcus equi subsp. zooepidemicus strain TN-714097]
MIKKKKDIRLLNAFLALLLVLGTGYLAGHDDLAADNPIKQVYQRIFGSDPQQAGLPKASRDWDTPSKALADSVMTATIKQ
QLGDVITWNGTGAYIINHNKTTLNAKVASLPYANNKTKMVQGQSVPTVANALLTKSTRQYQKRNDTGNGYSSWKPAGWHQ
VQGLKGRYSHAVDRGHLLGYALVGGLKGFDASMANPSNIATQTAWANQAANERSTGQNYYETKIRKALDSNKRVRYRVTL
LYEGNNLLASGSHLEAKSSDGSLEFNVFIPNVQAGLQIDYQTGQITVASSQP

Nucleotide


Download         Length: 879 bp        

>NTDB_id=400584 GJS34_RS04375 WP_014622727.1 908065..908943(+) (endA) [Streptococcus equi subsp. zooepidemicus strain TN-714097]
ATGATCAAAAAGAAGAAAGACATTAGGCTGCTTAATGCCTTTTTAGCGCTGTTGCTTGTTCTTGGAACAGGTTATTTGGC
AGGACATGATGACCTAGCAGCTGATAATCCGATCAAGCAGGTCTACCAAAGGATTTTTGGCTCTGACCCGCAGCAAGCCG
GGCTACCAAAGGCAAGCCGAGACTGGGACACTCCCTCCAAGGCCTTGGCAGATTCGGTCATGACAGCCACCATCAAACAG
CAATTAGGTGATGTGATTACTTGGAATGGCACTGGTGCCTATATCATTAACCATAATAAAACGACGCTAAATGCAAAGGT
AGCTAGTCTCCCCTATGCCAATAATAAAACAAAGATGGTACAAGGGCAAAGCGTTCCTACCGTAGCCAATGCCCTGCTAA
CCAAGTCAACCCGACAATATCAGAAGCGCAATGACACTGGAAATGGCTATAGCTCATGGAAGCCTGCTGGCTGGCATCAG
GTTCAGGGGTTAAAGGGAAGGTATAGTCACGCAGTGGATAGAGGGCATCTTCTAGGCTATGCGCTTGTTGGCGGGCTAAA
AGGCTTTGATGCCTCAATGGCTAATCCTAGTAATATCGCTACTCAAACCGCATGGGCTAACCAAGCAGCTAACGAGAGAT
CAACCGGACAAAACTATTATGAAACAAAAATTCGCAAAGCCCTAGATAGCAATAAGCGTGTCCGCTATCGTGTAACTTTG
CTTTATGAGGGAAATAATCTCTTAGCAAGCGGCAGTCATCTTGAGGCAAAGTCATCAGATGGTAGCTTAGAATTTAACGT
CTTTATCCCTAATGTACAGGCTGGATTACAGATTGATTATCAAACAGGTCAGATCACTGTAGCTTCTTCCCAGCCTTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(97-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

67.699

77.397

0.524
  endA Streptococcus pneumoniae D39

67.699

77.397

0.524
  endA Streptococcus pneumoniae R6

67.699

77.397

0.524
  endA Streptococcus pneumoniae TIGR4

67.699

77.397

0.524

Multiple sequence alignment