Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   HUR93_RS02330 Genome accession   NZ_CP054662
Coordinates   503278..503745 (-) Length   155 a.a.
NCBI ID   WP_000339836.1    Uniprot ID   -
Organism   Escherichia coli strain IGC_RcoliRes_1.1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 498278..508745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUR93_RS02305 rpsG 498419..498889 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  HUR93_RS02310 fusA 498986..501100 (+) 2115 WP_000124700.1 elongation factor G -
  HUR93_RS02315 tuf 501171..502355 (+) 1185 WP_000031783.1 elongation factor Tu -
  HUR93_RS02320 bfd 502538..502732 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  HUR93_RS02325 bfr 502805..503281 (+) 477 WP_000675515.1 bacterioferritin -
  HUR93_RS02330 pilD 503278..503745 (-) 468 WP_000339836.1 prepilin peptidase Machinery gene
  HUR93_RS02335 rpsJ 504124..504435 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  HUR93_RS02340 rplC 504468..505097 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  HUR93_RS02345 rplD 505108..505713 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  HUR93_RS02350 rplW 505710..506012 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  HUR93_RS02355 rplB 506030..506851 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  HUR93_RS02360 rpsS 506868..507146 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  HUR93_RS02365 rplV 507161..507493 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  HUR93_RS02370 rpsC 507511..508212 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  HUR93_RS02375 rplP 508225..508635 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16951.08 Da        Isoelectric Point: 8.1296

>NTDB_id=400541 HUR93_RS02330 WP_000339836.1 503278..503745(-) (pilD) [Escherichia coli strain IGC_RcoliRes_1.1]
MDANLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=400541 HUR93_RS02330 WP_000339836.1 503278..503745(-) (pilD) [Escherichia coli strain IGC_RcoliRes_1.1]
ATGGACGCTAACCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTAGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361

Multiple sequence alignment