Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   GJS33_RS04090 Genome accession   NZ_CP046041
Coordinates   863003..863881 (+) Length   292 a.a.
NCBI ID   WP_154298884.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain AZ-45470     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 858003..868881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJS33_RS04060 (GJS33_04060) - 858196..859071 (+) 876 WP_012515431.1 F0F1 ATP synthase subunit gamma -
  GJS33_RS04065 (GJS33_04065) atpD 859239..860645 (+) 1407 WP_012515432.1 F0F1 ATP synthase subunit beta -
  GJS33_RS04070 (GJS33_04070) - 860658..861074 (+) 417 WP_012515433.1 F0F1 ATP synthase subunit epsilon -
  GJS33_RS04075 (GJS33_04075) - 861208..861444 (+) 237 WP_012678109.1 DUF1146 family protein -
  GJS33_RS04080 (GJS33_04080) murA 861508..862779 (+) 1272 WP_043052969.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  GJS33_RS04085 (GJS33_04085) - 862783..862971 (+) 189 WP_012678107.1 DNA-directed RNA polymerase subunit beta -
  GJS33_RS04090 (GJS33_04090) endA 863003..863881 (+) 879 WP_154298884.1 DNA/RNA non-specific endonuclease Machinery gene
  GJS33_RS09820 - 863895..864053 (+) 159 WP_195759351.1 hypothetical protein -
  GJS33_RS04095 (GJS33_04095) pheS 864793..865836 (+) 1044 WP_012678105.1 phenylalanine--tRNA ligase subunit alpha -
  GJS33_RS04100 (GJS33_04100) pheT 866026..868431 (+) 2406 WP_154298885.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 31849.94 Da        Isoelectric Point: 10.3091

>NTDB_id=400521 GJS33_RS04090 WP_154298884.1 863003..863881(+) (endA) [Streptococcus equi subsp. zooepidemicus strain AZ-45470]
MIKKKKDIRLLNAFLALLLVLGTGYLAGHDDLAADNPIKQVYQRIFGSDPQQAGLPKASRDWDTPSKALADSVMTATIKQ
QLGDVITWNGTGAYIINHNKTTLNAKVASLPYANNKTKLVQGQSVPTVANALLTKSTRQYQKRNDTGNGYSSWKPAGWHQ
VQGLKGRYSHAVDRGHLLGYALVGGLKGFNASMANPSNIATQTAWANQAANERSTGQNYYETKIRRALDSNKRVRYRVTL
LYEGNNLLASGSHLEAKSSDGSLEFNVFIPNVQAGLQIDYQTGQITVASSQP

Nucleotide


Download         Length: 879 bp        

>NTDB_id=400521 GJS33_RS04090 WP_154298884.1 863003..863881(+) (endA) [Streptococcus equi subsp. zooepidemicus strain AZ-45470]
ATGATCAAAAAGAAGAAAGACATTAGGCTGCTTAATGCCTTTTTAGCGCTGTTGCTTGTTCTTGGAACAGGTTATTTGGC
AGGACATGATGACCTAGCAGCTGATAATCCGATCAAGCAGGTCTACCAAAGGATTTTTGGCTCTGACCCGCAGCAAGCCG
GGCTACCAAAGGCAAGCCGAGACTGGGACACTCCCTCCAAGGCCTTGGCAGATTCGGTCATGACAGCCACCATCAAACAG
CAATTAGGTGATGTGATTACTTGGAATGGCACTGGTGCCTATATCATTAACCATAATAAAACGACGCTAAATGCAAAGGT
AGCCAGTCTCCCCTATGCCAATAATAAAACAAAGCTGGTACAAGGGCAAAGCGTTCCTACCGTAGCCAATGCCCTGCTAA
CCAAGTCAACCCGACAATATCAGAAGCGCAATGACACTGGAAATGGCTATAGCTCATGGAAGCCTGCTGGCTGGCATCAG
GTTCAGGGGTTAAAGGGAAGGTATAGTCACGCAGTGGATAGAGGGCATCTTCTAGGCTATGCGCTTGTTGGCGGGCTAAA
AGGCTTTAATGCCTCAATGGCTAATCCCAGTAATATTGCTACTCAAACCGCATGGGCTAACCAAGCAGCCAACGAGAGAT
CAACCGGACAAAACTATTATGAAACAAAAATTCGCAGAGCCCTAGATAGCAATAAGCGTGTCCGCTATCGTGTAACTTTG
CTTTATGAGGGAAATAATCTCTTAGCAAGCGGCAGTCATCTTGAGGCAAAGTCATCAGATGGTAGCTTAGAATTTAACGT
CTTTATTCCTAATGTACAGGCTGGATTACAGATTGATTATCAAACAGGTCAGATCACTGTAGCCTCTTCACAGCCTTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(116-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

66.814

77.397

0.517
  endA Streptococcus pneumoniae D39

66.814

77.397

0.517
  endA Streptococcus pneumoniae R6

66.814

77.397

0.517
  endA Streptococcus pneumoniae TIGR4

66.814

77.397

0.517

Multiple sequence alignment