Detailed information NTG0400355

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: GJU84_RS05815
• Genome accession: NZ_CP046028
• Coordinates: 1182967..1185348 (+)
• Length: 793 a.a.
• NCBI ID: WP_145400812.1
• Uniprot ID: -
• Organism: Staphylococcus chromogenes strain 1401
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1177967..1190348

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GJU84_RS05790	-	1178577..1178732 (+)	156	WP_165806095.1	hypothetical protein	-
GJU84_RS05795 (GJU84_05735)	-	1178777..1179790 (-)	1014	WP_151364911.1	LLM class flavin-dependent oxidoreductase	-
GJU84_RS05800 (GJU84_05740)	-	1180010..1181158 (+)	1149	WP_037574172.1	cysteine desulfurase family protein	-
GJU84_RS05805 (GJU84_05745)	mnmA	1181155..1182267 (+)	1113	WP_165885671.1	tRNA 2-thiouridine(34) synthase MnmA	-
GJU84_RS05810 (GJU84_05750)	-	1182290..1182964 (+)	675	WP_165885672.1	tetratricopeptide repeat protein	-
GJU84_RS05815 (GJU84_05755)	recD2	1182967..1185348 (+)	2382	WP_145400812.1	ATP-dependent RecD-like DNA helicase	Machinery gene
GJU84_RS05820 (GJU84_05760)	alaS	1185574..1188204 (+)	2631	WP_165885673.1	alanine--tRNA ligase	-
GJU84_RS05825 (GJU84_05765)	-	1188266..1188538 (+)	273	WP_037574156.1	IreB family regulatory phosphoprotein	-
GJU84_RS05830 (GJU84_05770)	ruvX	1188531..1188959 (+)	429	WP_037574153.1	Holliday junction resolvase RuvX	-
GJU84_RS05835 (GJU84_05775)	-	1188974..1189288 (+)	315	WP_037574148.1	DUF1292 domain-containing protein	-
GJU84_RS05840 (GJU84_05780)	-	1189669..1190313 (+)	645	WP_145400814.1	O-methyltransferase	-

Sequence

Protein

• Length: 793 a.a.
• Molecular weight: 89659.91 Da
• Isoelectric Point: 4.6331

>NTDB_id=400355 GJU84_RS05815 WP_145400812.1 1182967..1185348(+) (recD2) [Staphylococcus chromogenes strain 1401]
MENPTLFEQSYVKGNIDVILFQNNDNYYTVLKVEVEDSNEDFDTTATIVGFFPNIVEGETYTFKGQITDHPKYGKQLKAE
TFQKVLPQTREAVIQYLSSELFKGVGKKTAESIVDTLGENAIQSILKDASVLEKVPKLSKTKQSQIADQVFQNQESEQIM
VRLNELGFGAKLAMDIYKFYKSDTLDILNQNPYQLVYDIRGVGFQKADQLANQMGISEHHPNRLKAGIQFVVEETCIKQG
HTYLPKETLVTESLQLLSKNSQVPIETTLIEEVLTQLVEENRLVDDQENIAIPSLYYSELKSAQNIYKMMQQQLHLEVFD
QSDIQMHIGEIEQKNNVSYAEAQKEALEAAMKHQIMILTGGPGTGKTTVIKGIVYLYAALHGISLDYDDYTEEDYPIVLA
APTGRASKRLHDATGLEAMTIHRLIGWNQETKPEDILDNEISAKLIIIDEMSMVDTWLFHQFMAAVPNDAQVVLVGDEDQ
LPSVGPGQVFKDLIASKTLPRINLTEVYRQQDGSSIIALAHRMKSGQSVDITERFHDRSFIPCHVDQIPEVVRKVVTNAV
SKGYDMSDIQVLAPMYRGNAGIHRLNKVLQEILNPLDTSEQREIQFGDVLFRKGDKVLQLVNRPNDNVFNGDIGVIVGVF
WAKENALNKDVVVVDFEGNEITYLKSDLTELTHAYCTSIHKAQGSEFPIVIMPIVKQYYRMLQKPILYTGLTRAKQSLVF
LGDADAFNLGLKTEGQVRLTREKSFLEQYFSTEEVQNENVELTEATMFQINPMINMENVTPYDFLEIDNAEKA

Nucleotide

• Length: 2382 bp

>NTDB_id=400355 GJU84_RS05815 WP_145400812.1 1182967..1185348(+) (recD2) [Staphylococcus chromogenes strain 1401]
GTGGAAAACCCAACACTATTTGAGCAGTCGTATGTTAAAGGAAACATTGATGTCATCTTATTTCAAAATAACGACAATTA
TTACACAGTGCTCAAAGTTGAAGTTGAGGATTCTAATGAGGACTTTGATACGACGGCGACGATAGTTGGGTTTTTTCCAA
ATATTGTTGAAGGTGAAACTTATACGTTCAAGGGGCAAATCACTGATCACCCTAAGTATGGGAAACAACTAAAAGCTGAA
ACTTTCCAGAAAGTGCTTCCGCAAACGAGAGAAGCGGTAATTCAATATTTATCAAGTGAACTTTTCAAGGGCGTTGGTAA
AAAAACTGCAGAATCCATTGTAGATACGTTAGGTGAAAATGCAATTCAGTCGATTCTTAAAGATGCATCTGTTCTTGAAA
AGGTGCCCAAATTGTCAAAAACAAAGCAATCGCAAATCGCAGACCAAGTATTTCAAAATCAAGAAAGCGAACAAATTATG
GTGCGTCTGAATGAATTAGGGTTTGGTGCAAAACTTGCGATGGATATTTACAAGTTTTATAAAAGTGATACTTTAGACAT
TCTCAATCAAAATCCCTACCAACTTGTTTATGATATACGAGGCGTGGGCTTTCAAAAAGCAGACCAATTGGCAAATCAAA
TGGGCATTTCAGAACATCACCCCAATCGCTTAAAAGCAGGCATTCAATTTGTCGTTGAAGAAACCTGTATTAAACAGGGA
CACACGTACTTGCCTAAGGAAACTTTAGTGACTGAGTCATTGCAACTTCTTTCAAAAAATAGTCAGGTGCCTATCGAAAC
AACTTTAATTGAAGAAGTATTGACTCAGCTTGTAGAAGAAAACCGTCTCGTTGATGATCAAGAAAATATTGCAATTCCTA
GCCTTTATTATTCAGAATTAAAGAGTGCTCAAAATATTTATAAAATGATGCAACAACAACTGCACCTCGAAGTTTTTGAT
CAATCAGATATTCAGATGCATATTGGTGAAATCGAGCAAAAAAATAATGTATCTTATGCTGAGGCACAAAAAGAGGCATT
AGAAGCTGCGATGAAGCATCAAATAATGATTTTGACAGGTGGGCCTGGTACAGGTAAAACCACTGTAATAAAAGGGATTG
TTTATCTGTATGCTGCTTTACACGGGATTTCTTTAGATTACGATGACTATACCGAAGAAGATTATCCTATTGTTTTAGCA
GCACCGACGGGTCGGGCTTCGAAACGACTACACGATGCGACTGGCTTGGAGGCTATGACCATTCACCGTCTAATTGGTTG
GAATCAAGAAACCAAACCTGAAGATATATTGGATAATGAAATTTCTGCCAAACTTATTATTATAGATGAAATGTCAATGG
TCGATACTTGGTTGTTTCACCAATTTATGGCAGCAGTTCCTAATGATGCACAAGTTGTTTTGGTAGGTGATGAAGATCAA
CTCCCATCGGTTGGGCCTGGACAAGTGTTTAAAGATTTAATTGCCTCAAAAACACTCCCACGTATCAATTTAACAGAAGT
TTATCGTCAGCAAGATGGTTCAAGTATCATTGCGCTTGCGCATCGTATGAAATCAGGTCAATCTGTTGATATTACTGAAC
GGTTTCATGATCGTTCATTCATCCCTTGTCATGTCGATCAAATACCAGAAGTGGTTCGTAAAGTGGTAACAAATGCAGTT
TCAAAAGGATATGATATGTCTGATATACAAGTATTAGCTCCGATGTATCGAGGAAATGCAGGGATTCATCGACTGAATAA
AGTGCTTCAAGAAATACTGAACCCTTTGGATACATCTGAGCAACGTGAAATTCAGTTTGGTGATGTCTTGTTTCGAAAAG
GCGACAAGGTATTACAACTTGTCAATCGGCCAAATGACAATGTATTTAATGGCGATATCGGAGTTATTGTAGGTGTTTTT
TGGGCTAAGGAAAATGCGCTAAACAAAGACGTCGTTGTCGTGGACTTTGAGGGCAATGAAATTACTTATTTAAAATCAGA
TTTAACCGAGTTGACACATGCCTATTGCACATCAATTCATAAAGCACAAGGTTCAGAATTCCCGATCGTCATTATGCCTA
TTGTCAAACAATATTATAGAATGTTGCAAAAACCCATTTTATATACGGGTCTCACACGTGCGAAGCAATCATTAGTGTTT
TTAGGAGACGCGGATGCATTTAATCTCGGATTAAAAACAGAAGGCCAAGTAAGATTAACTCGTGAAAAAAGCTTTTTAGA
ACAATACTTTTCTACAGAAGAAGTACAAAATGAAAATGTTGAACTTACAGAAGCCACTATGTTTCAAATTAATCCTATGA
TTAATATGGAGAATGTGACGCCTTACGATTTTTTAGAAATTGACAACGCTGAAAAGGCTTAA

Domains

Predicted by InterproScan.

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (585-656)

• Helix-hairpin-helix containing domain (HHH_RecD2) (153-243)

• AAA domain (AAA_30) (339-544)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (673-720)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	49.239	99.369	0.489