Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   HR116_RS04580 Genome accession   NZ_CP054591
Coordinates   1028321..1028746 (-) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain CDN118     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1023321..1033746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HR116_RS04560 ileS 1023478..1026309 (+) 2832 WP_003102617.1 isoleucine--tRNA ligase -
  HR116_RS04565 lspA 1026302..1026811 (+) 510 WP_003102615.1 signal peptidase II -
  HR116_RS04570 fkpB 1026804..1027244 (+) 441 WP_003161775.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  HR116_RS04575 ispH 1027330..1028274 (+) 945 WP_003134939.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  HR116_RS04580 comF 1028321..1028746 (-) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  HR116_RS04585 pilY2 1028743..1029090 (-) 348 WP_003161774.1 type 4a fimbrial biogenesis protein PilY2 -
  HR116_RS04590 pilY1 1029092..1032583 (-) 3492 WP_003102607.1 type 4a pilus biogenesis protein PilY1 -
  HR116_RS04595 pilX 1032595..1033182 (-) 588 WP_003112826.1 type 4a pilus minor pilin PilX -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=400343 HR116_RS04580 WP_003094721.1 1028321..1028746(-) (comF) [Pseudomonas aeruginosa strain CDN118]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=400343 HR116_RS04580 WP_003094721.1 1028321..1028746(-) (comF) [Pseudomonas aeruginosa strain CDN118]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGCTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAACTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACACCCACCAGCACTACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383