Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   GJD96_RS15625 Genome accession   NZ_CP046009
Coordinates   2877676..2878305 (-) Length   209 a.a.
NCBI ID   WP_094337273.1    Uniprot ID   -
Organism   Escherichia coli strain 1919D62     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2872676..2883305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJD96_RS15610 (GJD96_15620) helD 2872918..2874972 (-) 2055 WP_154167158.1 DNA helicase IV -
  GJD96_RS15615 (GJD96_15625) yccF 2875095..2875541 (+) 447 WP_001261235.1 YccF domain-containing protein -
  GJD96_RS15620 (GJD96_15630) yccS 2875551..2877713 (+) 2163 WP_000875045.1 YccS family putative transporter -
  GJD96_RS15625 (GJD96_15635) sxy/tfoX 2877676..2878305 (-) 630 WP_094337273.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  GJD96_RS15630 (GJD96_15640) sulA 2878524..2879033 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  GJD96_RS15635 (GJD96_15645) ompA 2879390..2880442 (+) 1053 WP_032223517.1 porin OmpA -
  GJD96_RS15640 (GJD96_15650) matP 2880517..2880969 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  GJD96_RS15645 (GJD96_15655) ycbZ 2881155..2882915 (+) 1761 WP_053900898.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.01 Da        Isoelectric Point: 9.2180

>NTDB_id=400191 GJD96_RS15625 WP_094337273.1 2877676..2878305(-) (sxy/tfoX) [Escherichia coli strain 1919D62]
MKSLSYKRIYKSQEYLSTLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=400191 GJD96_RS15625 WP_094337273.1 2877676..2878305(-) (sxy/tfoX) [Escherichia coli strain 1919D62]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGTCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment