Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   FOC72_RS08440 Genome accession   NZ_CP054570
Coordinates   1768240..1770606 (+) Length   788 a.a.
NCBI ID   WP_002896596.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain FDAARGOS_770     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1763240..1775606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC72_RS08420 (FOC72_08420) - 1765616..1766167 (-) 552 WP_002896592.1 CvpA family protein -
  FOC72_RS08425 (FOC72_08425) - 1766178..1766468 (-) 291 WP_002896593.1 hypothetical protein -
  FOC72_RS08430 (FOC72_08430) rnhC 1766657..1767547 (+) 891 WP_002896594.1 ribonuclease HIII -
  FOC72_RS08435 (FOC72_08435) lepB 1767551..1768180 (+) 630 WP_002896595.1 signal peptidase I -
  FOC72_RS08440 (FOC72_08440) recD/recD2/recDB 1768240..1770606 (+) 2367 WP_002896596.1 ATP-dependent RecD-like DNA helicase Machinery gene
  FOC72_RS08445 (FOC72_08445) - 1770660..1771298 (-) 639 WP_002896597.1 TetR/AcrR family transcriptional regulator -
  FOC72_RS08450 (FOC72_08450) - 1771374..1772120 (-) 747 WP_002896598.1 CPBP family intramembrane glutamic endopeptidase -
  FOC72_RS08455 (FOC72_08455) - 1772166..1772960 (-) 795 WP_002896599.1 CPBP family intramembrane glutamic endopeptidase -
  FOC72_RS08460 (FOC72_08460) - 1773268..1773594 (-) 327 WP_002896600.1 hypothetical protein -
  FOC72_RS08465 (FOC72_08465) dinB 1773807..1774871 (-) 1065 WP_002896601.1 DNA polymerase IV -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 88597.55 Da        Isoelectric Point: 4.5407

>NTDB_id=400191 FOC72_RS08440 WP_002896596.1 1768240..1770606(+) (recD/recD2/recDB) [Streptococcus sanguinis strain FDAARGOS_770]
MEFYFSGTIERIIFENPSNFFRILLLDIEDTDAEDFEDFEIIVTGSMADVMEGEDYTFWGSLVQHPKYGQQLKISRYERA
KPSSKGLVKYFSSDHFKGIGVKTAQKIVQLYGEDTEDTIDKILAEPEKLTQINGLAAKNREAFVAKLRLNYGTEMVLAKL
AAYGIPNKLAFQIQDTYKEETLDIVEKYPYQLVEDIQGIGFKIADHLAEELGIQSDAPERFRAGLVHTLLTQSMERGDTY
VEARDLLEHTIELLESSRQVELNLSLVADELAHLIEEDKVQNVETKIFENSLFFAEEGIKSNLVRLLEKGEQDCFDADEI
TAAIQQVEENSGITYDSIQKEAIRQAINQKVFILTGGPGTGKTTVINCIIAVYAQLRGLDLRKVNDLPILLAAPTGRAAR
RMNELTGLPSATIHRHLGMTGDDDTSHLDDYLDADFIIVDEFSMVDTWLANQLLSNISSQTKLLIVGDADQLPSVSPGQV
LADLLQIPTIPQTKLETIYRQSEESTIVTLASQIQKGILPADFTEKKADRSYFEARNEHIPPMIEKIASAAIRSGIPAQD
VQVLAPMYRGPAGIDQINNLMQNLINPVEKDELTFEAPDCQYRQGDRVIHLVNDAESNVFNGDLGYISDLLPAKYTDSKQ
DELTINFDGNEIIYPRSEWYKIRLAYAMSIHKSQGSEFPVVILPITKSSHRMLQRNLIYTAITRAKSKLILLGEKAAFNY
AVKNTGTARKTYLIERFGDLPQAESNIHNPVDKMKTPVEKYVLTEENFLKIDPLIGLTEEDIHSIFST

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=400191 FOC72_RS08440 WP_002896596.1 1768240..1770606(+) (recD/recD2/recDB) [Streptococcus sanguinis strain FDAARGOS_770]
ATGGAATTTTACTTTTCAGGAACGATTGAACGTATTATTTTTGAAAATCCCAGCAACTTTTTCCGTATCCTACTCTTAGA
TATTGAGGATACAGATGCCGAGGATTTTGAAGATTTTGAAATCATTGTCACCGGCTCTATGGCAGATGTCATGGAAGGTG
AAGATTACACCTTCTGGGGCAGTCTCGTCCAGCACCCCAAATATGGCCAGCAGCTGAAAATTTCTCGCTATGAGCGTGCC
AAACCCAGCAGCAAAGGCCTAGTAAAATACTTCTCCAGCGACCATTTCAAGGGCATCGGGGTCAAGACTGCTCAAAAAAT
CGTCCAACTCTACGGAGAAGATACCGAGGACACCATTGACAAGATTTTAGCAGAGCCGGAAAAGCTGACTCAGATAAACG
GCTTAGCAGCTAAGAACCGCGAGGCCTTTGTCGCCAAGCTAAGACTCAACTACGGAACTGAGATGGTACTAGCCAAGCTG
GCAGCCTACGGCATTCCCAATAAGCTAGCTTTTCAAATCCAGGATACCTACAAGGAAGAAACGCTGGATATTGTCGAAAA
ATATCCCTATCAGCTAGTAGAGGATATTCAGGGAATCGGCTTTAAAATTGCTGACCATCTGGCAGAAGAGCTGGGCATCC
AAAGTGATGCCCCTGAGCGTTTTCGGGCTGGCCTTGTCCATACCTTGCTGACCCAGTCCATGGAGCGGGGAGATACCTAT
GTTGAAGCTCGTGATTTACTAGAGCACACCATCGAACTCTTAGAAAGCTCACGTCAAGTGGAGCTGAACCTTAGTCTAGT
CGCTGATGAACTGGCCCATCTGATTGAGGAAGATAAGGTCCAAAATGTAGAGACCAAGATTTTTGAAAACAGCCTATTTT
TTGCTGAAGAAGGAATAAAAAGCAATCTAGTACGTCTGCTGGAAAAAGGAGAACAAGACTGCTTTGACGCAGATGAAATT
ACTGCCGCTATCCAGCAAGTGGAGGAGAACTCCGGCATCACCTATGACAGTATCCAAAAAGAAGCTATCCGTCAGGCTAT
CAATCAGAAGGTCTTTATCCTAACCGGCGGACCGGGTACTGGAAAAACTACCGTTATCAACTGTATCATCGCAGTCTACG
CCCAGCTTCGCGGTTTGGATCTGCGAAAGGTCAATGATCTGCCGATTCTGCTGGCAGCTCCGACCGGACGTGCTGCTCGT
CGCATGAACGAATTGACTGGTCTTCCTAGCGCTACTATTCACCGCCATTTGGGGATGACTGGCGATGATGATACCAGTCA
TTTGGATGATTATCTAGATGCTGATTTTATCATTGTAGATGAATTTTCCATGGTGGATACTTGGTTGGCTAATCAACTCC
TCAGCAATATCTCCTCTCAGACCAAACTCTTGATTGTCGGAGATGCCGACCAGCTGCCCTCTGTCAGTCCAGGTCAGGTA
CTGGCGGACTTGCTGCAGATACCGACTATTCCACAGACCAAGCTGGAAACCATCTATCGGCAGAGCGAAGAGTCTACAAT
CGTTACACTGGCTAGCCAGATTCAGAAGGGTATTTTACCAGCAGATTTTACAGAGAAAAAAGCGGACCGCTCATATTTTG
AAGCTAGAAATGAGCACATCCCGCCTATGATTGAGAAAATCGCTAGCGCAGCCATTCGCAGCGGTATCCCAGCTCAAGAT
GTTCAGGTATTAGCACCTATGTATCGGGGGCCAGCCGGTATCGACCAGATTAACAATCTTATGCAAAATCTCATCAATCC
TGTCGAGAAAGATGAGTTGACCTTTGAAGCTCCCGACTGTCAGTATCGCCAAGGAGACAGGGTTATCCACTTGGTCAATG
ATGCTGAAAGCAATGTCTTCAACGGTGACTTAGGCTATATCAGCGACCTGCTGCCTGCTAAGTACACCGACTCCAAGCAG
GACGAGCTGACCATCAACTTTGACGGCAATGAAATCATCTACCCGCGCAGCGAATGGTACAAGATTCGCCTAGCCTACGC
CATGAGCATCCACAAGTCTCAGGGCAGTGAATTTCCGGTGGTTATCTTGCCCATCACTAAGAGCAGTCACCGGATGCTGC
AGCGCAACCTCATCTACACCGCTATCACCCGCGCCAAGAGCAAGCTGATCCTGCTTGGGGAAAAAGCTGCCTTTAACTAT
GCCGTCAAAAACACCGGCACCGCCCGCAAAACTTATCTCATCGAGCGCTTTGGAGACCTCCCGCAAGCCGAAAGCAATAT
CCACAATCCTGTGGATAAAATGAAAACACCTGTGGAAAAATATGTCTTGACAGAAGAAAATTTCCTGAAAATTGACCCCC
TAATCGGCCTGACCGAGGAAGATATCCACAGTATATTCAGCACATAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(665-712)

Helix-hairpin-helix containing domain (HHH_RecD2)

(151-240)

AAA domain (AAA_30)

(335-525)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(577-647)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

40.933

95.178

0.39

Multiple sequence alignment