Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   SPNOXC_RS13155 Genome accession   NC_017592
Coordinates   1359140..1359862 (-) Length   240 a.a.
NCBI ID   WP_001010371.1    Uniprot ID   -
Organism   Streptococcus pneumoniae OXC141     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1354140..1364862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPNOXC_RS07205 (SPNOXC13360) - 1356715..1357881 (-) 1167 WP_000521372.1 MalY/PatB family protein -
  SPNOXC_RS07210 (SPNOXC13370) - 1357889..1358983 (-) 1095 WP_000031970.1 cystathionine gamma-synthase -
  SPNOXC_RS13155 rcrP 1359140..1359862 (-) 723 WP_001010371.1 ATP-binding cassette domain-containing protein Regulator
  SPNOXC_RS13160 - 1359935..1360558 (-) 624 WP_000638446.1 ABC transporter ATP-binding protein -
  SPNOXC_RS13165 - 1360562..1360822 (-) 261 WP_000768979.1 hypothetical protein -
  SPNOXC_RS07230 (SPNOXC13390) amiA 1360994..1362952 (-) 1959 WP_000748889.1 peptide ABC transporter substrate-binding protein Regulator
  SPNOXC_RS07235 (SPNOXC13400) - 1363155..1364777 (-) 1623 WP_000017803.1 polysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27132.92 Da        Isoelectric Point: 4.9157

>NTDB_id=39996 SPNOXC_RS13155 WP_001010371.1 1359140..1359862(-) (rcrP) [Streptococcus pneumoniae OXC141]
MNFNHVYFGYDENRPVLKDITCSIFKGQKIAFVGPSGSGKSTIVRLLERFYKPLSGDILMEQSSIYDFNLKEWRSKIAWV
SQNNAVLSGSIRDNLCLGLNRLVTDDELMKVLDLVSLGDEIRSMKEGLDTEVGERGRFLSGGQSQRLQIARTYLKDAEIL
IFDEATANLDADSEYAIISSLYSVLKEKTVVIIAHSLSTVKDVDCIFFLEEGKITGSGTHKELLENHERYARFVQEQMIE

Nucleotide


Download         Length: 723 bp        

>NTDB_id=39996 SPNOXC_RS13155 WP_001010371.1 1359140..1359862(-) (rcrP) [Streptococcus pneumoniae OXC141]
TTGAATTTTAACCATGTCTATTTTGGTTATGATGAAAATCGACCTGTCTTAAAGGATATTACTTGTTCAATTTTCAAGGG
GCAAAAAATTGCTTTTGTTGGACCATCTGGATCAGGAAAATCAACGATTGTGCGTTTGTTAGAGCGGTTTTATAAACCGC
TTTCAGGAGATATTCTAATGGAGCAATCAAGTATATATGATTTTAACTTAAAAGAATGGAGAAGTAAAATCGCTTGGGTT
TCACAAAATAATGCAGTCTTATCTGGCAGTATTCGTGACAATCTTTGTCTCGGTTTGAATCGCTTAGTAACTGATGATGA
ATTGATGAAAGTGCTAGACTTAGTATCACTAGGTGATGAGATTCGCTCCATGAAAGAGGGACTAGATACTGAAGTTGGTG
AACGCGGACGATTCTTGTCAGGGGGGCAAAGCCAAAGACTTCAAATAGCTAGAACCTACTTAAAAGATGCTGAAATTCTT
ATATTTGATGAAGCCACTGCTAATCTTGATGCGGATTCTGAGTATGCGATTATCAGTAGCCTCTATTCTGTATTAAAGGA
GAAGACGGTTGTGATTATAGCGCATAGTTTGTCAACGGTAAAAGATGTGGATTGTATTTTCTTCTTAGAGGAGGGGAAAA
TCACTGGCTCAGGAACTCATAAGGAACTACTGGAAAATCATGAGCGTTATGCTCGTTTTGTGCAGGAGCAAATGATAGAG
TGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

36.402

99.583

0.363

Multiple sequence alignment