Detailed information NTG0399308

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: GJE18_RS06150
• Genome accession: NZ_CP045927
• Coordinates: 1233138..1235510 (-)
• Length: 790 a.a.
• NCBI ID: WP_107368567.1
• Uniprot ID: -
• Organism: Staphylococcus agnetis strain 1379
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1228138..1240510

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GJE18_RS06125 (GJE18_06105)	-	1228207..1228851 (-)	645	WP_060551175.1	O-methyltransferase	-
GJE18_RS06130 (GJE18_06110)	-	1229183..1229503 (-)	321	WP_105995584.1	DUF1292 domain-containing protein	-
GJE18_RS06135 (GJE18_06115)	ruvX	1229518..1229946 (-)	429	WP_037565451.1	Holliday junction resolvase RuvX	-
GJE18_RS06140 (GJE18_06120)	-	1229939..1230211 (-)	273	WP_039645438.1	IreB family regulatory phosphoprotein	-
GJE18_RS06145 (GJE18_06125)	alaS	1230275..1232905 (-)	2631	WP_107368568.1	alanine--tRNA ligase	-
GJE18_RS06150 (GJE18_06130)	recD2	1233138..1235510 (-)	2373	WP_107368567.1	ATP-dependent RecD-like DNA helicase	Machinery gene
GJE18_RS06155 (GJE18_06135)	-	1235514..1236188 (-)	675	WP_107368566.1	tetratricopeptide repeat protein	-
GJE18_RS06160 (GJE18_06140)	mnmA	1236227..1237336 (-)	1110	WP_060551180.1	tRNA 2-thiouridine(34) synthase MnmA	-
GJE18_RS06165 (GJE18_06145)	-	1237339..1238478 (-)	1140	WP_103345272.1	cysteine desulfurase family protein	-
GJE18_RS06170 (GJE18_06150)	-	1238699..1239709 (+)	1011	WP_060551182.1	LLM class flavin-dependent oxidoreductase	-
GJE18_RS06175	-	1239761..1239925 (-)	165	WP_164671788.1	hypothetical protein	-
GJE18_RS06180 (GJE18_06155)	-	1240011..1240196 (-)	186	WP_107368565.1	CsbD family protein	-

Sequence

Protein

• Length: 790 a.a.
• Molecular weight: 89188.18 Da
• Isoelectric Point: 4.6128

>NTDB_id=399308 GJE18_RS06150 WP_107368567.1 1233138..1235510(-) (recD2) [Staphylococcus agnetis strain 1379]
MENPTLFEQSYIKGNIEVILFQNSDNYYTVLKVEVEDSNEDFETMATVVGYFPNIVEGETYTFKGQVAEHPRYGKQLKAE
TFQKEIPQTRDSIVQYLSSDLFKGVGKKTAESIVDTLGDNAIQSILNDASVLEQVPKLSKAKQQQIAEQVSQNQASEQIM
IRLNELGFGVKLAMDIYKFYKDETINVIDQNPYQLVYDIRGVGFQKADQLASLVGISYTHPNRLKAGIQYIVEEICIKQG
HTYLPKDTLMTESSTLLTKQHETAIDQTMLEDVLSQLIEEQRLINDNDHIAIPSLYYSELKSSQNIYKLMHNQVFMDTFD
QSDIQLHIGEIEESNGVTYAEAQKEALEAAMQNKMMILTGGPGTGKTTVIKGIVHLYAALHGISLNYDDYGDEDYPVVLA
APTGRASKRLHDATGLEAMTIHRLIGWNQDTKPEDILDNEIHAKLIIIDEMSMVDTWLFHQFMAAVPEDAQVVLVGDEDQ
LPSVGPGQVFKDLISSKSLKRINLKEVYRQQDGSSIIALAHNMKAGLNVDITERFHDRSFIPCHIDQIPEVVRKVVTNAV
SKGYDMSDIQVLAPMYRGNAGIHKLNKVLQDILNPIENDDTRAIHFGDIVYRKGDKVLQLVNRPNDNIFNGDIGVIVGIF
WAKENALNKDVVIVDYEGNEITYLKSDLTELTHAYCTSIHKAQGSEFPIVIMPIVKQYFRMLQKPILYTGLTRAKQSLVF
LGDSDAFNIGLKTEGQVRLTRQQSFLEQYFNSEETSSEVISLTEDTMYSIDPMINMQNVSPYDFMEIDNV

Nucleotide

• Length: 2373 bp

>NTDB_id=399308 GJE18_RS06150 WP_107368567.1 1233138..1235510(-) (recD2) [Staphylococcus agnetis strain 1379]
GTGGAAAACCCAACACTATTTGAACAGTCATATATCAAAGGGAATATCGAAGTCATTCTTTTTCAAAATAGTGATAATTA
CTATACGGTCCTCAAAGTAGAGGTTGAAGATTCTAATGAAGACTTTGAAACAATGGCAACAGTTGTTGGGTATTTTCCAA
ATATCGTTGAAGGCGAAACATATACTTTCAAAGGTCAAGTAGCAGAACATCCTCGGTACGGCAAACAATTAAAAGCAGAA
ACGTTTCAAAAAGAAATACCTCAAACGAGAGATTCTATTGTTCAATATTTATCAAGTGACCTGTTTAAAGGTGTGGGTAA
AAAAACAGCAGAATCCATTGTAGATACATTAGGTGACAATGCAATTCAGTCTATTTTAAATGACGCATCAGTTCTTGAAC
AAGTACCGAAATTGTCTAAAGCAAAGCAACAGCAAATTGCAGAACAAGTGTCTCAAAATCAAGCGAGTGAACAAATCATG
ATTCGCTTAAACGAACTTGGTTTTGGTGTGAAATTGGCCATGGATATTTATAAATTTTATAAGGATGAGACCATTAACGT
TATTGATCAAAATCCCTATCAACTCGTATATGATATACGTGGCGTAGGCTTTCAAAAAGCTGATCAACTTGCAAGTTTAG
TAGGTATTTCGTATACACACCCAAATCGACTTAAAGCAGGGATTCAATACATTGTAGAAGAAATCTGTATTAAACAGGGG
CATACGTATTTACCTAAAGATACGTTAATGACTGAGTCCTCTACCTTACTTACTAAACAACACGAAACAGCAATTGATCA
GACGATGCTTGAAGACGTACTTAGTCAACTTATAGAAGAGCAGCGGTTGATTAATGATAATGATCATATCGCGATACCAA
GTTTGTATTATTCAGAACTTAAAAGTAGCCAAAATATCTATAAATTAATGCATAATCAAGTATTTATGGATACGTTTGAT
CAATCAGACATTCAATTACATATTGGTGAAATTGAAGAATCAAATGGCGTGACTTATGCTGAGGCACAAAAAGAAGCACT
TGAAGCTGCAATGCAGAATAAAATGATGATTTTAACTGGTGGTCCAGGGACGGGTAAAACGACAGTAATCAAAGGGATTG
TACACCTCTATGCGGCCTTACATGGTATTTCTTTAAATTATGACGATTACGGAGATGAAGATTACCCCGTGGTCCTCGCA
GCACCTACTGGTCGTGCATCAAAAAGGCTACATGATGCGACGGGTCTTGAGGCTATGACGATTCATCGCTTGATAGGTTG
GAATCAAGATACCAAGCCAGAAGATATTCTTGATAATGAAATTCATGCAAAGCTTATCATTATTGATGAAATGTCAATGG
TGGATACATGGCTATTTCATCAATTTATGGCAGCAGTTCCTGAAGATGCACAAGTTGTATTAGTTGGTGATGAGGACCAA
TTACCATCAGTAGGTCCAGGACAAGTATTTAAAGATTTAATCTCATCAAAATCATTAAAGCGCATTAATTTAAAAGAAGT
ATACCGCCAACAAGATGGTTCAAGTATTATTGCACTTGCTCATAACATGAAGGCGGGTTTAAACGTAGACATTACCGAGC
GGTTTCATGATCGATCCTTTATTCCTTGTCATATTGATCAAATTCCAGAAGTTGTTCGTAAAGTCGTAACAAATGCCGTG
AGTAAAGGTTATGATATGTCTGATATTCAAGTACTTGCACCAATGTACCGTGGGAATGCGGGTATTCATAAGCTCAATAA
AGTCCTACAAGATATTTTAAATCCAATTGAAAACGATGATACAAGAGCAATACACTTTGGAGATATTGTGTACCGAAAAG
GTGACAAAGTACTTCAACTTGTTAATCGACCGAATGATAATATTTTTAATGGAGATATTGGTGTCATTGTTGGTATATTT
TGGGCGAAGGAAAATGCACTGAACAAAGATGTGGTCATTGTGGATTACGAAGGTAATGAGATTACGTATTTAAAATCGGA
TCTAACAGAATTAACACATGCGTATTGTACGTCAATTCATAAAGCGCAAGGGTCAGAATTTCCAATCGTCATTATGCCGA
TAGTTAAACAATATTTTCGGATGCTTCAAAAGCCAATTCTTTATACTGGATTAACCCGTGCAAAGCAATCACTTGTATTT
TTAGGAGATTCAGATGCTTTCAATATTGGTTTGAAAACGGAAGGCCAAGTGAGACTCACGCGGCAACAATCCTTTTTAGA
ACAATATTTTAATTCTGAAGAGACATCGAGTGAAGTCATTTCATTAACTGAAGACACAATGTATAGCATTGATCCAATGA
TTAATATGCAAAATGTAAGCCCATACGATTTTATGGAAATTGACAATGTTTAA

Domains

Predicted by InterproScan.

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (585-655)

• AAA domain (AAA_30) (339-544)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (673-720)

• Helix-hairpin-helix containing domain (HHH_RecD2) (153-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	48.985	99.747	0.489