Detailed information NTG0039927

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: DEIPR_RS10165
• Genome accession: NC_015161
• Coordinates: 2122069..2123235 (+)
• Length: 388 a.a.
• NCBI ID: WP_013615742.1
• Uniprot ID: F0RMR6
• Organism: Deinococcus proteolyticus MRP
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2117069..2128235

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DEIPR_RS10140 (Deipr_1998)	-	2117293..2118069 (-)	777	WP_013615737.1	alpha/beta hydrolase	-
DEIPR_RS10145 (Deipr_1999)	-	2118090..2119226 (-)	1137	WP_013615738.1	PLP-dependent aminotransferase family protein	-
DEIPR_RS10150 (Deipr_2000)	-	2119484..2120224 (-)	741	WP_013615739.1	amino acid ABC transporter ATP-binding protein	-
DEIPR_RS10155 (Deipr_2001)	-	2120272..2120931 (-)	660	WP_013615740.1	amino acid ABC transporter permease	-
DEIPR_RS10160 (Deipr_2002)	-	2120942..2121781 (-)	840	WP_013615741.1	basic amino acid ABC transporter substrate-binding protein	-
DEIPR_RS10165 (Deipr_2003)	pilD	2122069..2123235 (+)	1167	WP_013615742.1	A24 family peptidase	Machinery gene
DEIPR_RS10170 (Deipr_2004)	-	2123430..2124092 (-)	663	WP_013615743.1	hypothetical protein	-
DEIPR_RS10175 (Deipr_2005)	-	2124092..2125057 (-)	966	WP_013615744.1	GNAT family N-acetyltransferase	-
DEIPR_RS10180 (Deipr_2006)	-	2125054..2125254 (-)	201	WP_013615745.1	hypothetical protein	-
DEIPR_RS10185 (Deipr_2007)	-	2125382..2126710 (-)	1329	WP_013615746.1	dicarboxylate/amino acid:cation symporter	-
DEIPR_RS10190 (Deipr_2008)	-	2127049..2127732 (+)	684	WP_245532701.1	PIG-L deacetylase family protein	-

Sequence

Protein

• Length: 388 a.a.
• Molecular weight: 40650.01 Da
• Isoelectric Point: 5.6631

>NTDB_id=39927 DEIPR_RS10165 WP_013615742.1 2122069..2123235(+) (pilD) [Deinococcus proteolyticus MRP]
MDLLPLPFVLITALVFGLLVGSFTNVLIWRLPRGESISFPPSHCPHCDHPLAPKDLVPVFSWLSLGGKCRYCGAPIKTRY
PTVELITGVAYALIAYFYPPALYGFGTLGLMLFFTILLAGSAIDLDTYTIPDELTLPGVALGLGFAALAGAGLTAGGLPN
FSDALNGALMGAGILMTIDLLGSWVLRRFRERQYPDLPIGHQQIALALLVGAWAGPLWGLGAALLSAAVNAGARRVIPIP
ELLTLGGALLSVALGVNLGRDPLAMLNGALQGAGAAALVAGLYWWIQYAFIQKKSGETEVEEDAPFDPSAMGFGDVKLAG
AIGAFLGLSGVLVSLGVAIFAGAILGVIQMAMKAENRLKFGPYLAIGAVVAMLWGDDVVSWYRGMLGL

Nucleotide

• Length: 1167 bp

>NTDB_id=39927 DEIPR_RS10165 WP_013615742.1 2122069..2123235(+) (pilD) [Deinococcus proteolyticus MRP]
GTGGACCTGCTGCCCCTGCCTTTCGTCCTGATTACGGCCCTTGTCTTCGGGCTGCTGGTCGGCTCGTTTACCAACGTGCT
GATTTGGCGGCTGCCGCGTGGGGAGAGCATTTCCTTTCCGCCGAGCCACTGCCCGCACTGTGACCACCCGCTGGCCCCCA
AAGACCTGGTGCCCGTGTTCTCATGGCTGTCGCTGGGCGGGAAGTGCCGCTACTGCGGGGCCCCCATTAAGACCCGCTAC
CCCACCGTGGAACTGATAACGGGCGTGGCCTACGCGCTGATTGCCTACTTTTATCCACCTGCCCTGTACGGGTTCGGCAC
GCTGGGGCTGATGCTGTTTTTCACCATTTTGCTGGCGGGCAGCGCGATTGACCTGGATACCTACACCATTCCCGACGAGC
TGACCTTGCCTGGAGTGGCGCTGGGCCTGGGCTTTGCGGCGCTGGCGGGGGCGGGGCTGACGGCGGGCGGTCTGCCGAAT
TTCTCCGATGCTCTCAACGGAGCGCTGATGGGCGCAGGCATCCTGATGACGATTGACCTGCTGGGGTCGTGGGTGCTGCG
GCGCTTCCGTGAGCGTCAGTATCCCGACTTGCCGATTGGGCACCAGCAGATTGCGCTGGCGCTGCTGGTCGGCGCGTGGG
CAGGGCCGCTGTGGGGGCTGGGCGCGGCGCTGCTCTCGGCGGCGGTGAATGCGGGGGCGCGGCGGGTGATTCCTATTCCC
GAACTGCTCACGTTGGGCGGGGCGCTGCTGAGCGTGGCCCTGGGTGTGAACCTGGGCCGTGACCCGCTCGCCATGCTGAA
CGGTGCCCTACAGGGTGCAGGCGCGGCGGCGCTGGTTGCCGGGCTGTACTGGTGGATTCAGTACGCCTTTATCCAGAAGA
AGTCGGGCGAGACCGAGGTAGAAGAAGACGCCCCCTTTGACCCGAGCGCGATGGGCTTCGGGGACGTGAAACTGGCGGGG
GCCATCGGCGCTTTTCTGGGCCTGAGCGGGGTGCTGGTCAGCCTGGGCGTGGCGATTTTTGCCGGTGCGATTCTGGGCGT
GATTCAGATGGCGATGAAAGCCGAAAACCGCCTGAAGTTCGGCCCCTACCTGGCAATTGGCGCGGTGGTGGCGATGCTGT
GGGGGGACGACGTAGTGAGCTGGTACCGGGGGATGCTAGGGCTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (111-228)

• Type IV leader peptidase family (Peptidase_A24) (239-347)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (15-96)

3D structure

• AlphaFold DB: F0RMR6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	63.824	99.742	0.637