Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   GI367_RS04250 Genome accession   NZ_CP045926
Coordinates   862954..863733 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain AL7     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 857954..868733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GI367_RS04230 (GI367_04230) trmFO 858641..859948 (+) 1308 WP_007611407.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  GI367_RS04235 (GI367_04235) xerC 860018..860935 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  GI367_RS04240 (GI367_04240) hslV 860951..861496 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  GI367_RS04245 (GI367_04245) hslU 861513..862916 (+) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  GI367_RS04250 (GI367_04250) codY 862954..863733 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  GI367_RS04255 (GI367_04255) flgB 864087..864476 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  GI367_RS04260 (GI367_04260) flgC 864476..864928 (+) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  GI367_RS04265 (GI367_04265) fliE 864939..865259 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  GI367_RS04270 (GI367_04270) fliF 865302..866912 (+) 1611 WP_007611422.1 flagellar basal-body MS-ring/collar protein FliF -
  GI367_RS04275 (GI367_04275) fliG 866925..867941 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  GI367_RS04280 (GI367_04280) fliH 867934..868689 (+) 756 WP_007611429.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=399239 GI367_RS04250 WP_003154263.1 862954..863733(+) (codY) [Bacillus velezensis strain AL7]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=399239 GI367_RS04250 WP_003154263.1 862954..863733(+) (codY) [Bacillus velezensis strain AL7]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATCGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment