Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   GIG89_RS08880 Genome accession   NZ_CP045924
Coordinates   1760340..1761275 (-) Length   311 a.a.
NCBI ID   WP_019292241.1    Uniprot ID   A0AAJ2IZ38
Organism   Lactococcus petauri strain CF11     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1755340..1766275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GIG89_RS08855 - 1755386..1756246 (-) 861 WP_019292237.1 S1 RNA-binding domain-containing protein -
  GIG89_RS08860 frr 1756357..1756914 (-) 558 WP_017368646.1 ribosome recycling factor -
  GIG89_RS08865 pyrH 1756943..1757659 (-) 717 WP_019292238.1 UMP kinase -
  GIG89_RS08870 - 1757750..1758943 (-) 1194 WP_019294231.1 acetate kinase -
  GIG89_RS08875 - 1759062..1760255 (-) 1194 WP_019292240.1 acetate kinase -
  GIG89_RS08880 comYH 1760340..1761275 (-) 936 WP_019292241.1 class I SAM-dependent methyltransferase Machinery gene
  GIG89_RS08885 - 1761321..1761551 (-) 231 WP_019292242.1 DUF3165 family protein -
  GIG89_RS08890 typA 1761630..1763471 (-) 1842 WP_019335381.1 translational GTPase TypA -
  GIG89_RS08895 - 1763792..1764004 (+) 213 WP_003133311.1 YqgQ family protein -
  GIG89_RS08900 - 1763997..1764962 (+) 966 WP_019292244.1 ROK family glucokinase -
  GIG89_RS08905 - 1764982..1765362 (+) 381 WP_019292245.1 rhodanese-like domain-containing protein -
  GIG89_RS08910 - 1765402..1765848 (-) 447 WP_003133306.1 Dps family protein -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 35095.12 Da        Isoelectric Point: 4.6120

>NTDB_id=399205 GIG89_RS08880 WP_019292241.1 1760340..1761275(-) (comYH) [Lactococcus petauri strain CF11]
MDIEKIEKAFGLVLENIMAIQAELLTDFYDAFVEQNAAYLGALEFASLTKENNDKVRSMNLTKSEWQKLFQFVLLQGSRV
APMQANHNLTPDSIGFIFNFIIEELHKERKIRLLEFGSGTGNLAETLLVHMQKEVDYVGFEVDDLLLDLSASMSEVMGTE
ASFLQIDAVKPQPLEPVDVVMSDLPVGYYPDDETASHFQVHDKSEHTYVHHLMVEQSFKYLKESGFALFLAPDNLLTSAQ
SEFLKAWIKEHAHVAAVITLPSSLFKGAGKSIYLLSKNQTNTPTFVYPLSDLADRSILQEFMSEFVKNVKI

Nucleotide


Download         Length: 936 bp        

>NTDB_id=399205 GIG89_RS08880 WP_019292241.1 1760340..1761275(-) (comYH) [Lactococcus petauri strain CF11]
ATGGATATAGAGAAAATCGAAAAAGCCTTTGGATTAGTTCTTGAGAATATTATGGCAATTCAAGCAGAGCTCTTGACTGA
TTTTTATGATGCTTTTGTGGAACAAAATGCAGCTTACTTAGGCGCTTTAGAATTTGCGTCACTGACGAAGGAAAATAATG
ATAAGGTTCGTTCAATGAACCTCACGAAAAGTGAATGGCAAAAGCTGTTTCAGTTTGTTTTGCTTCAGGGGTCACGTGTC
GCACCAATGCAGGCAAATCATAATTTAACTCCGGATTCTATTGGTTTCATCTTTAATTTTATCATTGAGGAGTTACACAA
AGAAAGAAAGATTCGTTTACTAGAATTTGGCTCAGGAACGGGGAATTTGGCGGAAACGCTTTTGGTTCACATGCAAAAAG
AAGTAGACTATGTTGGTTTTGAAGTAGATGACCTCTTGTTGGATTTGTCCGCTTCAATGTCAGAAGTCATGGGAACAGAA
GCAAGTTTTCTCCAAATCGATGCCGTTAAACCACAGCCCTTGGAACCTGTGGATGTTGTGATGAGTGATCTCCCAGTTGG
TTATTATCCAGACGATGAAACAGCCAGCCATTTTCAAGTGCATGACAAATCAGAACATACCTATGTGCACCATTTAATGG
TTGAGCAATCTTTCAAATATCTGAAAGAGAGTGGTTTTGCGCTCTTCTTAGCTCCAGATAATCTTTTGACAAGTGCACAG
TCTGAGTTTTTGAAGGCTTGGATTAAAGAGCATGCGCATGTTGCTGCAGTTATTACATTACCTTCATCACTCTTTAAAGG
TGCAGGGAAATCAATTTATTTATTAAGTAAAAACCAGACAAATACACCGACTTTTGTTTACCCCTTGTCTGATTTAGCAG
ACCGTTCTATTTTGCAAGAATTTATGTCTGAGTTTGTGAAAAATGTTAAGATTTGA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(173-290)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

49.677

99.678

0.495
  comYH Streptococcus mutans UA159

49.355

99.678

0.492

Multiple sequence alignment