Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   GIG89_RS00370 Genome accession   NZ_CP045924
Coordinates   74775..75566 (+) Length   263 a.a.
NCBI ID   WP_003133634.1    Uniprot ID   -
Organism   Lactococcus petauri strain CF11     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 69775..80566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GIG89_RS00340 rpmH 70472..70606 (+) 135 WP_003135255.1 50S ribosomal protein L34 -
  GIG89_RS00345 - 70756..71667 (+) 912 WP_019291919.1 aldo/keto reductase -
  GIG89_RS00350 - 71868..72134 (+) 267 WP_003133629.1 IreB family regulatory phosphoprotein -
  GIG89_RS00355 ruvX 72134..72562 (+) 429 WP_003133630.1 Holliday junction resolvase RuvX -
  GIG89_RS00360 - 72577..72900 (+) 324 WP_003133632.1 DUF1292 domain-containing protein -
  GIG89_RS00365 - 73040..74638 (+) 1599 WP_153924312.1 glycosyltransferase -
  GIG89_RS00370 codY 74775..75566 (+) 792 WP_003133634.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  GIG89_RS00375 gatC 75712..76017 (+) 306 WP_019291917.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  GIG89_RS00380 gatA 76017..77489 (+) 1473 WP_153924316.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  GIG89_RS00385 gatB 77491..78924 (+) 1434 WP_019291915.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  GIG89_RS00390 - 78939..80294 (-) 1356 WP_153924320.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 29180.60 Da        Isoelectric Point: 4.7260

>NTDB_id=399167 GIG89_RS00370 WP_003133634.1 74775..75566(+) (codY) [Lactococcus petauri strain CF11]
MATLLEKTRKITSVLQDGVTDLKQELPYDNMTERLANVIDCNACIIDTKGKLLGYSLPYEINNDRVNELFHVQKQLPEDY
ARAAIRIYDTLANITINEPLSVFPAELLGEYPNGLTTCAPIYGSGMRLGTFILWRTDGKFSDDDLVLAELATTVIGVQLS
NLKLEQMEENIRKDTMANMAVNTLSYSEMKAVKAILEELDGEEGHVIASVIADKIGITRSVIVNALRKLESAGVIESRSL
GMKGTYLKVLNQGLFTKLEGRNF

Nucleotide


Download         Length: 792 bp        

>NTDB_id=399167 GIG89_RS00370 WP_003133634.1 74775..75566(+) (codY) [Lactococcus petauri strain CF11]
GTGGCTACTTTACTAGAAAAAACCCGCAAAATTACATCAGTTCTGCAAGATGGAGTAACTGATTTAAAGCAGGAGTTACC
CTATGATAACATGACAGAGCGTTTAGCCAACGTTATTGACTGTAATGCTTGTATCATTGATACAAAAGGGAAACTTTTGG
GCTATTCACTGCCATACGAAATTAACAACGATCGTGTTAATGAACTTTTCCATGTACAAAAACAATTGCCAGAAGATTAT
GCACGTGCGGCTATCCGTATCTACGACACTTTAGCAAATATCACAATTAACGAGCCTTTGTCAGTATTTCCTGCAGAACT
TTTAGGTGAGTATCCTAATGGTTTGACAACATGTGCACCAATCTATGGTAGTGGTATGCGCTTGGGAACCTTCATCTTAT
GGCGTACAGACGGAAAATTCAGTGATGATGATCTTGTGCTTGCAGAGCTTGCAACAACAGTTATCGGTGTTCAACTTTCA
AATCTTAAGCTTGAACAAATGGAAGAAAATATCCGTAAAGACACGATGGCTAACATGGCAGTCAATACACTTTCGTATTC
AGAAATGAAGGCTGTGAAAGCAATTCTTGAAGAACTTGATGGTGAAGAAGGACATGTTATTGCTTCAGTCATTGCCGACA
AGATTGGAATTACACGTTCAGTAATCGTTAATGCACTACGTAAGCTTGAATCTGCTGGTGTTATTGAAAGCCGTTCGTTG
GGAATGAAAGGGACTTACCTAAAAGTTCTTAACCAAGGTTTATTTACAAAGCTTGAAGGTCGTAACTTCTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-259)

CodY GAF-like domain (CodY)

(3-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

82.129

100

0.821
  codY Bacillus subtilis subsp. subtilis str. 168

49.609

97.338

0.483

Multiple sequence alignment