Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DEIPR_RS05785 Genome accession   NC_015161
Coordinates   1202130..1202726 (+) Length   198 a.a.
NCBI ID   WP_013614902.1    Uniprot ID   F0RNG7
Organism   Deinococcus proteolyticus MRP     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1197130..1207726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEIPR_RS05755 (Deipr_1135) prfA 1197393..1198526 (+) 1134 WP_013614896.1 peptide chain release factor 1 -
  DEIPR_RS05760 (Deipr_1136) - 1198513..1199001 (+) 489 WP_013614897.1 NUDIX hydrolase -
  DEIPR_RS05765 (Deipr_1137) - 1199003..1199962 (+) 960 WP_013614898.1 RluA family pseudouridine synthase -
  DEIPR_RS05770 (Deipr_1138) - 1199962..1200522 (+) 561 WP_148231788.1 DUF99 family protein -
  DEIPR_RS05775 (Deipr_1139) infC 1200743..1201387 (-) 645 WP_041221969.1 translation initiation factor IF-3 -
  DEIPR_RS05780 (Deipr_1140) - 1201658..1201948 (+) 291 WP_013614901.1 YbaB/EbfC family nucleoid-associated protein -
  DEIPR_RS05785 (Deipr_1141) recR 1202130..1202726 (+) 597 WP_013614902.1 recombination mediator RecR Machinery gene
  DEIPR_RS05790 (Deipr_1142) - 1202806..1203327 (+) 522 WP_013614903.1 hypothetical protein -
  DEIPR_RS05795 (Deipr_1143) - 1203612..1205324 (+) 1713 WP_245532740.1 ATP-binding protein -
  DEIPR_RS05800 (Deipr_1144) hpt 1205380..1205922 (+) 543 WP_013614905.1 hypoxanthine phosphoribosyltransferase -
  DEIPR_RS05805 (Deipr_1145) - 1205995..1206726 (-) 732 WP_245532679.1 histidine phosphatase family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21493.72 Da        Isoelectric Point: 4.8016

>NTDB_id=39916 DEIPR_RS05785 WP_013614902.1 1202130..1202726(+) (recR) [Deinococcus proteolyticus MRP]
MKYPPSLVALIRELSRLPGIGPKSAQRLAFHLFEQPAEDIERLSAALLAAKSELHTCPVCFNITDAELCDVCSDPSRDQN
LICVVEEPGDVIALERSGEYQGLYHVLHGVLSPMNGVGPEQLHIKELLPRAREGLEVILATGTTVEGDATALYLQRLLEP
LGAEVSRIAYGLQVGSALEYADEVTLGRALLGRQKIRG

Nucleotide


Download         Length: 597 bp        

>NTDB_id=39916 DEIPR_RS05785 WP_013614902.1 1202130..1202726(+) (recR) [Deinococcus proteolyticus MRP]
GTGAAATATCCCCCCAGTCTGGTCGCCCTGATTCGTGAACTGTCACGCCTGCCCGGCATCGGGCCCAAGAGTGCGCAGCG
GCTGGCCTTCCACCTGTTCGAGCAACCAGCAGAAGATATCGAGCGGCTCTCGGCGGCGCTGCTGGCCGCCAAGTCGGAGC
TGCACACCTGTCCGGTGTGCTTCAACATCACCGACGCGGAACTGTGTGACGTGTGCAGCGACCCCAGCCGGGACCAGAAC
CTCATTTGCGTGGTCGAGGAACCCGGCGACGTGATTGCGCTGGAACGCAGCGGCGAGTATCAGGGGCTGTACCACGTGCT
GCACGGCGTCCTGAGCCCGATGAACGGCGTGGGCCCCGAACAGCTGCACATCAAGGAGCTGCTGCCGCGTGCCCGCGAGG
GGCTGGAAGTGATTTTGGCCACCGGCACCACGGTAGAAGGAGACGCCACCGCCCTGTACCTGCAGCGCTTGCTGGAGCCG
CTGGGCGCAGAAGTCAGCCGCATCGCCTACGGGTTGCAGGTAGGCTCGGCGCTTGAATATGCCGACGAGGTCACTCTGGG
CCGCGCCCTGCTGGGACGGCAGAAAATTCGCGGCTGA

Domains

Predicted by InterproScan.

RecR protein (RecR_ZnF)

(40-78)

Toprim domain (Toprim_4)

(81-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F0RNG7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

84.184

98.99

0.833

Multiple sequence alignment