Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   APZ19_RS16375 Genome accession   NZ_CP045859
Coordinates   3485185..3485910 (+) Length   241 a.a.
NCBI ID   WP_054823141.1    Uniprot ID   A0AAP9KBG6
Organism   Vibrio owensii strain SH14     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3480185..3490910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APZ19_RS16360 (APZ19_16360) - 3481290..3483611 (+) 2322 WP_054823139.1 Tex family protein -
  APZ19_RS16365 (APZ19_16365) - 3483736..3484200 (-) 465 WP_054823140.1 hypothetical protein -
  APZ19_RS16370 (APZ19_16370) bioH 3484336..3485100 (-) 765 WP_054823188.1 pimeloyl-ACP methyl ester esterase BioH -
  APZ19_RS16375 (APZ19_16375) comF 3485185..3485910 (+) 726 WP_054823141.1 ComF family protein Machinery gene
  APZ19_RS16380 (APZ19_16380) nfuA 3486008..3486592 (+) 585 WP_005434470.1 Fe-S biogenesis protein NfuA -
  APZ19_RS16385 (APZ19_16385) nudE 3486767..3487330 (+) 564 WP_005434477.1 ADP compounds hydrolase NudE -
  APZ19_RS16390 (APZ19_16390) cysQ 3487375..3488202 (+) 828 WP_005434478.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  APZ19_RS16395 (APZ19_16395) - 3488491..3489252 (-) 762 WP_039985610.1 type II secretion system protein N -
  APZ19_RS16400 (APZ19_16400) - 3489254..3489745 (-) 492 WP_009707965.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27650.80 Da        Isoelectric Point: 8.1957

>NTDB_id=398770 APZ19_RS16375 WP_054823141.1 3485185..3485910(+) (comF) [Vibrio owensii strain SH14]
MLSHQWQNIMHRVLGSQCGLCRFPISAEQKPNPMRWCDCCFEHLTPIKRCTRCGLKMTEEESQTSTECGECLKEPPPWQR
LYTLGDYDFPLSNQVQRFKDHGEAWHVGALTQLLAERIEQQAPVITCVPIHWQRYLKRGFNQSHILAKHLAHHLNVRYED
KVFKRVKSVQSQRGNKKASREQNLKGAFTLQGEVNFSHIAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPGS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=398770 APZ19_RS16375 WP_054823141.1 3485185..3485910(+) (comF) [Vibrio owensii strain SH14]
ATGTTATCTCATCAATGGCAAAACATCATGCATCGCGTACTTGGCAGCCAATGTGGTTTGTGTCGATTTCCGATCTCCGC
TGAACAGAAACCAAACCCAATGCGTTGGTGTGACTGTTGTTTTGAGCACCTCACGCCCATCAAACGCTGCACTCGTTGTG
GTTTAAAAATGACAGAAGAGGAATCACAAACCTCAACAGAGTGCGGTGAGTGCCTGAAAGAGCCACCGCCTTGGCAACGT
TTATATACATTAGGGGATTATGATTTCCCTCTGTCTAACCAAGTGCAACGCTTTAAAGATCATGGTGAGGCATGGCATGT
CGGCGCACTCACTCAATTGCTGGCCGAACGAATTGAACAGCAAGCTCCAGTGATTACTTGTGTACCAATACATTGGCAAC
GTTATTTAAAACGAGGATTTAACCAAAGCCATATCTTAGCCAAACACCTCGCCCACCATTTAAATGTGCGATATGAAGAT
AAGGTATTTAAACGCGTTAAAAGCGTCCAATCGCAACGAGGAAACAAAAAAGCCAGTCGTGAACAGAATTTAAAAGGGGC
ATTTACCCTACAAGGTGAGGTGAACTTTTCCCACATCGCGATTGTGGATGATGTGGTTACAACAGGTAGTACGGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACTCCTGCCCCGGGCTCA
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

88.382

100

0.884
  comF Vibrio cholerae strain A1552

46.639

98.755

0.461

Multiple sequence alignment