Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   HR070_RS01275 Genome accession   NZ_CP054236
Coordinates   281358..282122 (-) Length   254 a.a.
NCBI ID   WP_001136233.1    Uniprot ID   Q8FCN0
Organism   Escherichia coli strain EcPF5     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 276358..287122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HR070_RS01245 (HR070_01245) - 276992..278350 (-) 1359 WP_021517921.1 PTS galactitol transporter subunit IIC -
  HR070_RS01250 (HR070_01250) - 278427..278708 (-) 282 WP_000084021.1 PTS sugar transporter subunit IIB -
  HR070_RS01255 (HR070_01255) - 278705..279178 (-) 474 WP_001443177.1 PTS sugar transporter subunit IIA -
  HR070_RS01260 (HR070_01260) - 279203..279949 (-) 747 WP_001304937.1 GntR family transcriptional regulator -
  HR070_RS01265 (HR070_01265) nikR 280148..280549 (-) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  HR070_RS01270 (HR070_01270) nikE 280555..281361 (-) 807 WP_000173679.1 nickel import ATP-binding protein NikE -
  HR070_RS01275 (HR070_01275) amiE 281358..282122 (-) 765 WP_001136233.1 nickel import ATP-binding protein NikD Regulator
  HR070_RS01280 (HR070_01280) nikC 282122..282955 (-) 834 WP_001008953.1 nickel ABC transporter permease subunit NikC -
  HR070_RS01285 (HR070_01285) nikB 282952..283896 (-) 945 WP_000947070.1 nickel ABC transporter permease subunit NikB -
  HR070_RS01290 (HR070_01290) nikA 283896..285470 (-) 1575 WP_021517920.1 nickel ABC transporter substrate-binding protein -
  HR070_RS01295 (HR070_01295) acpT 285581..286168 (-) 588 WP_000285789.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26840.46 Da        Isoelectric Point: 6.6882

>NTDB_id=398550 HR070_RS01275 WP_001136233.1 281358..282122(-) (amiE) [Escherichia coli strain EcPF5]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSHGKIVEQGDVETLFNVPKHAVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=398550 HR070_RS01275 WP_001136233.1 281358..282122(-) (amiE) [Escherichia coli strain EcPF5]
ATGCCACAACAGATTGAACTCCGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTGCACGGCGTATCGTTAACCCTGCA
ACGTGGGCGTGTGCTGGCGTTAGTCGGCGGTAGTGGCAGCGGGAAGTCGCTGACCTGCGCCGCGACGCTGGGCATTCTGC
CTGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTGGCCGATGGAAAACCGGTTTCTCCCTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGTGCCTTTAATCCGCTGCACACCATGCACACCCACGCGCGTGAAACCTGCCT
GGCGCTGGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTCTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGCGAATCACCG
TTTATCATCGCCGATGAACCAACCACCGATCTCGACGTTGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCACCGGGAATGCTGCTGGTTACCCATGATATGGGCGTGGTAGCGCGTCTAGCAGACGATGTGGCGGTAA
TGTCTCACGGTAAGATTGTTGAACAGGGCGATGTAGAAACGCTGTTTAACGTCCCCAAACATGCGGTAACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8FCN0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398

Multiple sequence alignment