Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   GDS87_RS22620 Genome accession   NZ_CP045835
Coordinates   4608127..4609077 (-) Length   316 a.a.
NCBI ID   WP_283869844.1    Uniprot ID   A0AAX3WVG1
Organism   Lysinibacillus pakistanensis strain LZH-9     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4603127..4614077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GDS87_RS22595 (GDS87_22115) - 4604233..4604889 (+) 657 WP_369593941.1 hypothetical protein -
  GDS87_RS22600 (GDS87_22120) - 4605036..4605350 (-) 315 WP_369593942.1 antibiotic biosynthesis monooxygenase -
  GDS87_RS22605 (GDS87_22125) - 4605352..4606359 (-) 1008 WP_283869841.1 siderophore ABC transporter substrate-binding protein -
  GDS87_RS22610 (GDS87_22130) - 4606423..4607184 (-) 762 WP_283869842.1 ABC transporter ATP-binding protein -
  GDS87_RS22615 (GDS87_22135) - 4607181..4608134 (-) 954 WP_369593943.1 iron chelate uptake ABC transporter family permease subunit -
  GDS87_RS22620 (GDS87_22140) ceuB 4608127..4609077 (-) 951 WP_283869844.1 ABC transporter permease Machinery gene
  GDS87_RS22625 (GDS87_22145) - 4609366..4610418 (-) 1053 WP_369593944.1 hypothetical protein -
  GDS87_RS22630 (GDS87_22150) menC 4610518..4611624 (-) 1107 WP_369593945.1 o-succinylbenzoate synthase -
  GDS87_RS22635 (GDS87_22155) - 4611647..4612471 (-) 825 WP_369593946.1 GNAT family N-acetyltransferase -
  GDS87_RS22640 (GDS87_22160) - 4612471..4613616 (-) 1146 WP_369593947.1 M20 peptidase aminoacylase family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34804.03 Da        Isoelectric Point: 10.1143

>NTDB_id=398550 GDS87_RS22620 WP_283869844.1 4608127..4609077(-) (ceuB) [Lysinibacillus pakistanensis strain LZH-9]
MKIRYLLTATVVLSIVSLFIGVVNIKPSDLLDFQSEETRLFLISRVPRLVAILLAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDATKLGVLISMMFFTNVTYFQKISFAFIFALAGTLLFMQILNRIKFKDAIFIPLIGLMFGNILSSITTFFAYKADII
QNISAWLQGDFSLMMKGRYELLYISVPVLIFAYIYANRFTVAGMGEDFAKNLGLSYKFVVNFGLVLVALISTTVVLTVGV
IPFLGLIIPNIISLFKGDNLAKTLPHTALLGMSFLLLCDILGRVLIYPYEIPISMTVGVIGSAIFLIMLFRGKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=398550 GDS87_RS22620 WP_283869844.1 4608127..4609077(-) (ceuB) [Lysinibacillus pakistanensis strain LZH-9]
ATGAAAATAAGATATCTTTTAACAGCAACTGTAGTGTTGTCGATTGTGTCACTGTTTATCGGAGTAGTGAATATTAAACC
GAGTGATCTATTAGACTTCCAATCAGAAGAAACTAGACTATTTTTAATTAGTCGTGTACCTAGGCTTGTAGCAATTTTAC
TGGCTGGTGCAGGTATGAGTATTGCTGGTTTAATTATGCAAAGCTTAAGTAGAAATAAGTTTGTATCACCCACAACAGCA
GGTACTTTAGATGCTACAAAGTTGGGTGTGCTGATTTCGATGATGTTTTTTACAAATGTCACGTACTTTCAAAAAATTTC
CTTCGCTTTCATATTTGCTCTAGCCGGCACACTATTATTTATGCAAATATTAAATCGGATTAAATTTAAAGATGCAATCT
TTATACCGCTTATTGGCTTGATGTTTGGGAATATTCTTTCGTCTATTACGACATTCTTTGCGTATAAGGCAGATATTATC
CAAAACATTTCTGCATGGTTACAAGGAGATTTCTCATTAATGATGAAAGGTCGTTATGAACTTTTATACATAAGTGTACC
CGTGCTGATTTTTGCTTACATTTATGCAAACCGTTTCACAGTCGCTGGTATGGGTGAGGATTTTGCTAAAAACCTTGGTC
TTTCCTACAAGTTTGTTGTGAATTTTGGTTTAGTGTTAGTAGCCCTTATTTCAACAACAGTGGTCCTTACTGTTGGTGTG
ATTCCTTTCCTTGGGTTAATCATTCCAAATATCATTTCGCTGTTCAAGGGGGATAATCTTGCAAAAACATTGCCTCATAC
TGCTTTGCTAGGGATGTCGTTCTTACTATTATGCGACATTTTAGGGCGTGTGCTGATTTACCCTTATGAAATTCCAATTA
GTATGACAGTTGGTGTCATCGGAAGTGCGATCTTCCTAATTATGTTGTTTAGGGGGAAAGCATATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.215

100

0.522

Multiple sequence alignment