Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   INV104_RS08805 Genome accession   NC_017591
Coordinates   1680612..1681883 (+) Length   423 a.a.
NCBI ID   WP_001113209.1    Uniprot ID   -
Organism   Streptococcus pneumoniae INV104     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1675612..1686883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INV104_RS08770 (INV104_15280) - 1675840..1676928 (-) 1089 WP_000719722.1 site-2 protease family protein -
  INV104_RS08775 (INV104_15290) - 1676947..1677417 (-) 471 WP_000257107.1 DUF3013 family protein -
  INV104_RS08780 (INV104_15300) - 1677708..1678160 (-) 453 WP_000961810.1 type II toxin-antitoxin system HicB family antitoxin -
  INV104_RS08785 - 1678197..1678376 (-) 180 WP_001132276.1 type II toxin-antitoxin system HicA family toxin -
  INV104_RS08790 - 1678513..1678692 (-) 180 WP_001809903.1 hypothetical protein -
  INV104_RS08795 - 1678857..1679075 (-) 219 WP_001273377.1 hypothetical protein -
  INV104_RS08800 (INV104_15310) - 1679068..1680021 (-) 954 WP_001155321.1 IS30-like element ISSpn8 family transposase -
  INV104_RS08805 (INV104_15320) rarA 1680612..1681883 (+) 1272 WP_001113209.1 replication-associated recombination protein A Machinery gene
  INV104_RS08815 (INV104_15330) - 1682427..1683746 (-) 1320 WP_000608881.1 glycoside hydrolase family 32 protein -
  INV104_RS08820 (INV104_15340) - 1683756..1684601 (-) 846 WP_000819520.1 carbohydrate ABC transporter permease -
  INV104_RS12345 - 1684603..1684725 (-) 123 Protein_1703 sugar ABC transporter permease -
  INV104_RS12970 - 1684766..1685580 (+) 815 Protein_1704 IS5-like element IS1515 family transposase -
  INV104_RS08835 (INV104_15350) - 1685545..1686378 (-) 834 WP_000032536.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 47011.47 Da        Isoelectric Point: 5.9471

>NTDB_id=39834 INV104_RS08805 WP_001113209.1 1680612..1681883(+) (rarA) [Streptococcus pneumoniae INV104]
MPDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKEALQ
IALSNPERGFDFPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDEGIRHITLDIMENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVDASLHYAARLIEAGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALDAAQRIGFPEARILIANVV
IDLALSPKSNSAYVAMDKALADLKTSGHLPIPRHLRDGHYSGSKELGNAQDYLYPHNYPGNWIKQDYLPEKIRNHHYFQA
EDTGKYERALAQRKEAIDRLRKI

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=39834 INV104_RS08805 WP_001113209.1 1680612..1681883(+) (rarA) [Streptococcus pneumoniae INV104]
ATGCCAGACAATCTCGCGCTTCGCATGCGCCCTAAAACCATCGACCAGGTCATCGGTCAGGAGCATCTGGTCGGACCTGG
AAAAATCATCCGCCGCATGGTGGAAGCCAACCGCCTGTCCTCCATGATTCTATATGGCCCTCCTGGAATCGGCAAAACCA
GTATTGCCTCTGCCATCGCTGGAACGACCAAGTATGCCTTTCGAACTTTCAATGCGACAGTTGATAGTAAAAAGCGACTG
CAAGAAATCTCGGAAGAAGCTAAATTTTCTGGTGGTCTCGTCCTATTGCTAGACGAAATTCATCGACTAGATAAGACCAA
GCAAGACTTCCTCTTGCCTCTCTTGGAAAGTGGACTGGTCATCATGATTGGAGCAACGACTGAAAATCCTTTCTTCTCTG
TCACTCCTGCCATTCGTAGCCGTGTTCAAATTTTCGAGTTGGAACCTCTGTCTAACCAAGACGTCAAAGAGGCCCTGCAG
ATAGCTCTAAGTAACCCTGAACGTGGTTTTGATTTTCCAATAGAACTAGATGAGGATGCGCTGGATTTCATCGCAACCTC
TACAAACGGAGACCTTCGCTCTGCCTTTAACTCACTGGACTTGGCTGTTCTCTCTACCCCTGAGAATGACGAGGGCATTC
GCCACATCACCTTAGACATCATGGAAAATAGTCTTCAGAGAAGCTACATCACTATGGACAAGGATGGAGACGGTCACTAT
GATGTTCTATCTGCCCTGCAAAAGTCTATCCGTGGCTCAGATGTGGATGCCAGTCTCCACTATGCTGCCCGCTTGATTGA
GGCTGGGGATCTGCCTAGTCTCGCTCGTCGCTTGACTGTTATCGCCTATGAAGATATTGGCTTAGCCAATCCTGAGGCCC
AGATTCATACCGTGACTGCTCTGGATGCTGCACAAAGGATTGGTTTCCCCGAAGCCCGCATTCTCATTGCCAATGTCGTG
ATTGATTTGGCCCTTTCTCCAAAATCCAACTCAGCCTATGTAGCTATGGATAAGGCACTTGCTGACCTCAAAACATCAGG
GCACTTGCCTATTCCGCGACACCTGCGTGATGGGCACTACAGTGGAAGCAAGGAACTGGGGAATGCCCAAGACTATCTCT
ATCCACACAACTATCCTGGAAATTGGATCAAGCAAGACTATCTGCCAGAAAAAATTCGTAATCATCACTATTTCCAAGCA
GAAGATACTGGTAAATATGAACGGGCTTTGGCTCAAAGAAAGGAAGCTATCGATCGTTTGCGAAAAATCTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(173-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

57.518

99.054

0.57

Multiple sequence alignment