Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   BSN5_RS20530 Genome accession   NC_014976
Coordinates   3900608..3901387 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis BSn5     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3895608..3906387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSN5_RS20510 (BSn5_20175) trmFO 3896301..3897608 (+) 1308 WP_015715883.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  BSN5_RS20515 (BSn5_20180) xerC 3897676..3898590 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  BSN5_RS20520 (BSn5_20185) clpQ 3898603..3899148 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  BSN5_RS20525 (BSn5_20190) hslU 3899165..3900568 (+) 1404 WP_014476801.1 HslU--HslV peptidase ATPase subunit -
  BSN5_RS20530 (BSn5_20195) codY 3900608..3901387 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  BSN5_RS20535 (BSn5_20200) flgB 3901767..3902156 (+) 390 WP_015715884.1 flagellar basal body rod protein FlgB -
  BSN5_RS20540 (BSn5_20205) flgC 3902156..3902608 (+) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  BSN5_RS20545 (BSn5_20210) fliE 3902619..3902939 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  BSN5_RS20550 (BSn5_20215) fliF 3902985..3904595 (+) 1611 WP_051388163.1 flagellar basal-body MS-ring/collar protein FliF -
  BSN5_RS20555 (BSn5_20220) fliG 3904608..3905624 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  BSN5_RS20560 (BSn5_20225) fliH 3905617..3906369 (+) 753 WP_003244804.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=39809 BSN5_RS20530 WP_003220850.1 3900608..3901387(+) (codY) [Bacillus subtilis BSn5]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=39809 BSN5_RS20530 WP_003220850.1 3900608..3901387(+) (codY) [Bacillus subtilis BSn5]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment