Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   HR084_RS06175 Genome accession   NZ_CP054177
Coordinates   1201653..1202570 (+) Length   305 a.a.
NCBI ID   WP_015252359.1    Uniprot ID   -
Organism   Bacillus subtilis strain JCL16     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1196653..1207570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HR084_RS06160 (HR084_06160) trpS 1197233..1198225 (-) 993 WP_038430004.1 tryptophan--tRNA ligase -
  HR084_RS06165 (HR084_06165) oppA 1198969..1200606 (+) 1638 WP_015252360.1 oligopeptide ABC transporter substrate-binding protein OppA -
  HR084_RS06170 (HR084_06170) oppB 1200714..1201649 (+) 936 WP_003245554.1 oligopeptide ABC transporter permease OppB -
  HR084_RS06175 (HR084_06175) amiD 1201653..1202570 (+) 918 WP_015252359.1 oligopeptide ABC transporter permease OppC Regulator
  HR084_RS06180 (HR084_06180) oppD 1202575..1203651 (+) 1077 WP_072173823.1 oligopeptide ABC transporter ATP-binding protein OppD -
  HR084_RS06185 (HR084_06185) oppF 1203653..1204570 (+) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  HR084_RS06190 (HR084_06190) yjbB 1204677..1205894 (+) 1218 WP_173614405.1 MFS transporter -
  HR084_RS06195 (HR084_06195) yjbC 1206059..1206637 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  HR084_RS06200 (HR084_06200) spx 1206818..1207213 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33635.15 Da        Isoelectric Point: 10.2873

>NTDB_id=397795 HR084_RS06175 WP_015252359.1 1201653..1202570(+) (amiD) [Bacillus subtilis strain JCL16]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAILDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=397795 HR084_RS06175 WP_015252359.1 1201653..1202570(+) (amiD) [Bacillus subtilis strain JCL16]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGAGACATTTTCGTCCGTACATGGGTAGGGGCTCGAATCTCAAT
CTTTATCGGTGTTGCAGCTGCTATTCTCGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGACGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAAACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCGATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTCAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364