Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   TTJL18_RS09795 Genome accession   NC_017587
Coordinates   1824955..1826220 (+) Length   421 a.a.
NCBI ID   WP_014630338.1    Uniprot ID   -
Organism   Thermus thermophilus JL-18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1819955..1831220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TTJL18_RS09765 (TtJL18_1962) folE 1821198..1821821 (-) 624 WP_011173891.1 GTP cyclohydrolase I FolE -
  TTJL18_RS09770 (TtJL18_1963) - 1821860..1822552 (-) 693 WP_011173892.1 gamma carbonic anhydrase family protein -
  TTJL18_RS09775 (TtJL18_1964) - 1822533..1822913 (-) 381 WP_014630335.1 NUDIX hydrolase -
  TTJL18_RS09780 (TtJL18_1965) - 1822904..1823767 (-) 864 WP_014630336.1 DUF1028 domain-containing protein -
  TTJL18_RS12970 (TtJL18_1966) - 1823869..1823985 (+) 117 Protein_1930 GTP-binding protein -
  TTJL18_RS09790 (TtJL18_1967) - 1824247..1824924 (-) 678 WP_014630337.1 hypothetical protein -
  TTJL18_RS09795 (TtJL18_1968) rarA 1824955..1826220 (+) 1266 WP_014630338.1 replication-associated recombination protein A Machinery gene
  TTJL18_RS09800 (TtJL18_1969) - 1826171..1826740 (-) 570 WP_041444467.1 hypothetical protein -
  TTJL18_RS09805 (TtJL18_1970) - 1826767..1827552 (-) 786 WP_014630340.1 carbohydrate ABC transporter permease -
  TTJL18_RS09810 (TtJL18_1971) - 1827583..1828761 (+) 1179 Protein_1935 CaiB/BaiF CoA transferase family protein -
  TTJL18_RS09815 (TtJL18_1973) - 1828885..1829763 (+) 879 WP_014630342.1 ABC transporter ATP-binding protein -
  TTJL18_RS09820 (TtJL18_1974) - 1829756..1830526 (+) 771 WP_014630343.1 ABC transporter permease -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46011.77 Da        Isoelectric Point: 8.3310

>NTDB_id=39758 TTJL18_RS09795 WP_014630338.1 1824955..1826220(+) (rarA) [Thermus thermophilus JL-18]
MGEVEPLAERLRPRTLDEVLGQPHLTGPKGLLRRMLEARRLSSMVLFGPPGTGKTTLARLLAEGVGRPFLRLSAVEAGLK
EVRQAVEEARAKGGLVLFLDEIHRFNKAQQDALLPHLESGLLTLIGATAENPAFALVPALRSRLRLLPVRPLGEEDLLAL
LKRALEDPRGLPGTPYEEEALRVLAQAAGGDARFALNTLELAASFGRVDLGSVREALGAERFGMDREGDRFYDLVSALHK
SLRGSHVDAALYYLARLLQGGADPRYLARRLIRVAAEDVGLADPLALRLAVAAKEAYEALGSPEGELALVEATVYLALAP
KSNSLYAAWKRAQEAAKAHPEAEVPLNLRNAPTGLARALGHGEGYAYYHEDKEGSFAQRYLPEGLEGLTLFEATGEGWEE
RVRERLKALRERFQAARRRRG

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=39758 TTJL18_RS09795 WP_014630338.1 1824955..1826220(+) (rarA) [Thermus thermophilus JL-18]
ATGGGGGAGGTGGAACCTCTGGCCGAACGCCTCCGGCCCCGGACCCTGGACGAGGTCCTGGGCCAGCCCCACCTCACCGG
CCCCAAGGGGCTTCTAAGGCGGATGCTGGAGGCAAGGCGGCTTTCCTCCATGGTCCTCTTCGGCCCCCCGGGCACGGGTA
AGACCACCCTGGCGAGGCTCCTCGCCGAGGGGGTGGGAAGGCCCTTCCTAAGGCTCTCCGCGGTGGAGGCGGGGCTTAAG
GAGGTGCGCCAGGCGGTGGAGGAGGCCAGGGCGAAGGGGGGTCTCGTCCTCTTCCTGGACGAGATCCACCGCTTCAACAA
GGCCCAGCAGGACGCCCTCCTCCCCCACCTGGAGTCGGGCCTCCTCACCCTCATCGGGGCCACGGCGGAAAACCCCGCCT
TCGCCCTCGTCCCCGCCCTCCGCTCCCGCCTCCGCCTCCTGCCCGTGCGGCCCCTGGGCGAAGAGGACCTCCTCGCCCTC
CTCAAGCGGGCCCTCGAGGACCCAAGGGGCCTTCCCGGCACGCCCTACGAGGAGGAGGCCCTAAGGGTTCTCGCCCAGGC
GGCCGGGGGCGACGCCCGCTTTGCCCTGAACACCTTGGAGCTCGCCGCAAGCTTCGGCCGGGTGGACCTAGGGAGCGTGC
GGGAGGCCCTGGGGGCGGAGCGCTTCGGCATGGACCGGGAAGGGGACCGGTTTTACGACCTGGTCTCCGCCCTCCACAAG
TCCCTGCGGGGAAGCCACGTGGACGCCGCCCTCTACTACCTGGCGAGGCTCCTTCAGGGCGGGGCCGACCCCCGCTACCT
CGCCCGCAGGCTCATCCGGGTGGCGGCGGAGGACGTGGGCCTCGCCGATCCCCTGGCCCTCCGCCTCGCCGTGGCCGCCA
AGGAGGCCTACGAGGCCCTGGGAAGCCCAGAAGGGGAGCTCGCCCTGGTGGAGGCCACCGTCTACCTGGCCTTAGCCCCC
AAGAGCAACAGCCTCTACGCCGCCTGGAAAAGGGCCCAGGAGGCGGCCAAGGCCCACCCCGAGGCCGAGGTCCCCCTGAA
CCTGAGAAACGCCCCCACCGGCCTCGCCCGCGCCCTGGGGCACGGGGAGGGGTACGCCTACTACCACGAGGACAAGGAGG
GAAGCTTCGCCCAGAGGTACCTCCCTGAGGGCCTGGAAGGCCTCACCCTCTTTGAGGCCACGGGGGAGGGGTGGGAGGAG
CGGGTGCGGGAAAGGCTCAAGGCGCTTCGGGAGCGGTTCCAAGCCGCCAGGCGGCGGAGAGGCTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(176-243)

ATPase family associated with various cellular activities (AAA) (AAA)

(44-144)

MgsA AAA+ ATPase C terminal (MgsA_C)

(244-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

38.242

100

0.382

Multiple sequence alignment