Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   HRE60_RS09505 Genome accession   NZ_CP054153
Coordinates   2071530..2072798 (-) Length   422 a.a.
NCBI ID   WP_181670799.1    Uniprot ID   -
Organism   Streptococcus salivarius strain DB-B5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2066530..2077798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRE60_RS09470 (HRE60_09470) - 2067087..2067602 (-) 516 WP_003004261.1 DUF308 domain-containing protein -
  HRE60_RS09475 (HRE60_09475) - 2067821..2068333 (-) 513 WP_002919839.1 helix-turn-helix transcriptional regulator -
  HRE60_RS10985 - 2068541..2068724 (+) 184 Protein_1821 hypothetical protein -
  HRE60_RS09480 (HRE60_09480) - 2068770..2069747 (+) 978 WP_181670798.1 replication initiation protein -
  HRE60_RS09485 (HRE60_09485) - 2069759..2069947 (+) 189 WP_000369785.1 DUF3173 domain-containing protein -
  HRE60_RS09490 (HRE60_09490) - 2069949..2071088 (+) 1140 WP_023022110.1 site-specific integrase -
  HRE60_RS09505 (HRE60_09505) rarA 2071530..2072798 (-) 1269 WP_181670799.1 replication-associated recombination protein A Machinery gene
  HRE60_RS09510 (HRE60_09510) rpmB 2072968..2073156 (+) 189 WP_002885786.1 50S ribosomal protein L28 -
  HRE60_RS09515 (HRE60_09515) - 2073283..2073549 (+) 267 WP_002885737.1 IreB family regulatory phosphoprotein -
  HRE60_RS09520 (HRE60_09520) ruvX 2073549..2073968 (+) 420 WP_022496180.1 Holliday junction resolvase RuvX -
  HRE60_RS09525 (HRE60_09525) - 2074074..2074379 (+) 306 WP_002887079.1 DUF1292 domain-containing protein -
  HRE60_RS09530 (HRE60_09530) - 2074592..2076238 (+) 1647 WP_181670800.1 hypothetical protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46656.12 Da        Isoelectric Point: 5.6846

>NTDB_id=397577 HRE60_RS09505 WP_181670799.1 2071530..2072798(-) (rarA) [Streptococcus salivarius strain DB-B5]
MPDNLALRMRPRTISEVIGQKHLVGEGKIIRRMVEANMLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKAKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKEAIL
GVLEDKERGFDFDVQLDEDALDFIAMATNGDLRSAYNSLDLAVMSTPASEDGLRHITLDTVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTVIAYEDIGLANPDAQVHTVTALEAAQKVGFPEARILIANVV
VDLALSPKSNSAYMAMDAALADLRKSGNLPIPRHLRDGHYAGSKELGNAQDYKYPHDYPEKWVKQQYLPDKLRGVNYFQP
NETGKYERALGANKERIDKLSR

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=397577 HRE60_RS09505 WP_181670799.1 2071530..2072798(-) (rarA) [Streptococcus salivarius strain DB-B5]
ATGCCAGATAATCTTGCTCTACGCATGCGTCCACGTACAATTTCAGAGGTGATTGGTCAGAAGCATTTGGTTGGTGAAGG
TAAAATTATTCGCCGTATGGTAGAAGCGAATATGCTGTCGTCAATGATTCTCTACGGGCCACCAGGAATCGGGAAGACCT
CAATAGCTAGTGCTATTGCAGGAACAACAAAATTTGCTTTTAGAACCTTTAATGCTACTGTTGATAGCAAGAAACGCCTA
CAGGAAATTGCGGAAGAGGCTAAATTTTCAGGTGGCTTAGTTCTGCTTCTAGATGAGATTCATCGTTTGGATAAAGCTAA
ACAAGACTTTTTATTGCCACTCTTAGAGAATGGTAATATTATCATGATTGGGGCTACAACGGAGAATCCGTTTTTTTCTG
TCACACCAGCCATCCGTAGTCGTGTACAAATATTTGAGTTGGAACCACTCTCTAACGAGGATATTAAGGAAGCTATCCTA
GGTGTTCTAGAGGACAAGGAGCGTGGCTTTGACTTTGATGTCCAGTTAGATGAGGATGCTCTAGATTTTATTGCTATGGC
TACTAATGGTGATTTACGTTCGGCTTATAATTCCTTAGATTTAGCTGTCATGTCGACGCCAGCTTCAGAAGATGGGCTTC
GCCATATTACTTTAGATACAGTGGAAAATAGTTTACAACGTAGCTATATCACCATGGATAAAGACGGTGATGGACACTAT
GATGTGCTTTCTGCTTTGCAAAAATCTATTCGAGGCTCTGATGTTAATGCCAGTCTTCACTATGCAGCACGTTTGGTTGA
AGCAGGAGATCTCCCTAGTCTAGCACGGCGCTTGACTGTGATTGCGTACGAGGATATTGGTTTAGCTAATCCTGATGCGC
AAGTTCACACGGTTACAGCTTTGGAAGCTGCACAGAAAGTAGGTTTCCCAGAGGCGCGTATTTTGATTGCTAATGTAGTT
GTTGACTTAGCTTTATCTCCTAAGTCGAATTCGGCTTATATGGCTATGGATGCTGCCTTGGCAGACCTTAGAAAATCAGG
GAATTTACCTATTCCTCGTCATTTGAGAGATGGACACTATGCTGGAAGCAAGGAACTGGGCAATGCACAAGATTACAAGT
ATCCCCATGATTATCCTGAAAAGTGGGTCAAACAACAATATCTTCCGGATAAATTAAGAGGTGTGAATTATTTCCAACCC
AATGAAACCGGGAAATATGAAAGAGCTCTTGGAGCTAATAAAGAACGGATTGATAAGTTATCTAGGTAA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(173-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

60.143

99.289

0.597

Multiple sequence alignment