Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutS/mutS2   Type   Machinery gene
Locus tag   HRE60_RS08380 Genome accession   NZ_CP054153
Coordinates   1873804..1876152 (+) Length   782 a.a.
NCBI ID   WP_049545827.1    Uniprot ID   -
Organism   Streptococcus salivarius strain DB-B5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1868804..1881152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRE60_RS08370 (HRE60_08370) - 1869757..1869948 (-) 192 WP_238799481.1 hypothetical protein -
  HRE60_RS10980 - 1870035..1870436 (-) 402 WP_004183523.1 DUF6608 family protein -
  HRE60_RS08375 (HRE60_08375) polA 1870990..1873629 (-) 2640 WP_181670718.1 DNA polymerase I -
  HRE60_RS08380 (HRE60_08380) mutS/mutS2 1873804..1876152 (+) 2349 WP_049545827.1 endonuclease MutS2 Machinery gene
  HRE60_RS08385 (HRE60_08385) - 1876254..1876796 (-) 543 WP_002884677.1 CvpA family protein -
  HRE60_RS08390 (HRE60_08390) - 1876793..1877107 (-) 315 WP_004183554.1 hypothetical protein -
  HRE60_RS08395 (HRE60_08395) rnhC 1877424..1878314 (+) 891 WP_181670719.1 ribonuclease HIII -
  HRE60_RS08400 (HRE60_08400) lepB 1878333..1878974 (+) 642 WP_181670720.1 signal peptidase I -

Sequence

Protein


Download         Length: 782 a.a.        Molecular weight: 87627.93 Da        Isoelectric Point: 6.4811

>NTDB_id=397560 HRE60_RS08380 WP_049545827.1 1873804..1876152(+) (mutS/mutS2) [Streptococcus salivarius strain DB-B5]
MNTKILDQLEFNKVKDQFTEYLQTEQAQAELRDLVPMTNPERIQNQFTEIQEMAEIFVEHHGFAIGSLRDISEPLRRLEL
DADLNIQELIAIKKVLQASADLGRFYADLENVELVALKRLFEKIEAFPSLQGSLQSINDGGFIEHFASPELQNIRRQLKS
CDDAIRQTLQDILKKSGHMLAESLIASRNGRSVLPVKNTYRNRIAGVVHDISSSGNTVYIEPRAVIQLNEEITQLRADER
HEMARILHELSDQLRPQAAAIANNAWILGHMDFIRGKYLYLQDKKAVIPKISDNQTLQLLNVRHPLLVNPVANDLRFDED
LTAIVITGPNTGGKTVMLKTLGLAQLMAQSGLPILADKGSRVAIFQEIFADIGDEQSIEQSLSTFSSHMTHIVEILDAAD
SNSLVLVDELGAGTDPQEGASLAMAILEHLRLSQIKTMATTHYPELKAYGIETQHVENASMEFDTATLSPTYRFMQGVPG
RSNAFEIARRLGLNEIIVKEAENLTDTDSDVNRIIEQLEAQTVETQKRLEHIKDVEQENLKFNRAVKKLYNEFSHEYDKE
LEKAQKEIQEMVDTALAESDSILKNLHDKSQLKPHEVIDAKGKLKKLAPQVDLSKNKVLRKAKKEKAARAPRIGDDIIVT
AYGQRGTLTSQAKNGNWEAQVGLIKMTLKADEFTLVRAQAEAQQPKKKQINVVKKAKKSSGGPRARLDLRGKRYEEAMQE
LDAFIDQALLNNMSQVDIIHGIGTGVIRDAVTKYLRRHRHVKSFEYAPQSAGGSGCTIATLG

Nucleotide


Download         Length: 2349 bp        

>NTDB_id=397560 HRE60_RS08380 WP_049545827.1 1873804..1876152(+) (mutS/mutS2) [Streptococcus salivarius strain DB-B5]
ATGAACACAAAGATTTTAGACCAATTAGAATTTAACAAGGTCAAGGACCAGTTCACAGAATACCTGCAGACCGAACAGGC
TCAGGCGGAGTTACGTGACTTGGTACCTATGACCAATCCAGAGAGAATTCAAAATCAATTTACAGAAATTCAAGAAATGG
CTGAGATTTTCGTAGAGCACCATGGCTTTGCCATTGGTAGCTTGCGAGATATTTCTGAGCCCTTGCGTCGCTTGGAACTG
GATGCTGACCTCAACATTCAGGAGCTTATTGCCATCAAGAAGGTGCTGCAAGCTTCAGCTGACCTTGGTCGCTTCTACGC
TGACCTTGAAAATGTTGAGCTCGTCGCTCTCAAACGTCTTTTCGAAAAGATTGAAGCCTTCCCAAGTCTACAAGGTAGCC
TTCAAAGTATCAATGATGGTGGTTTTATTGAGCATTTTGCTAGCCCTGAGTTGCAGAATATCCGTCGTCAACTCAAATCT
TGCGATGATGCCATTCGCCAGACCTTGCAAGACATTCTCAAGAAATCTGGCCACATGTTGGCTGAGAGTTTGATTGCTAG
TCGTAATGGTCGTTCAGTGCTGCCTGTCAAAAATACCTACCGTAACCGTATTGCTGGGGTTGTGCATGACATCTCAAGCT
CTGGAAACACAGTGTATATCGAGCCACGCGCCGTTATCCAGCTTAACGAAGAAATTACACAATTACGTGCAGACGAACGT
CATGAGATGGCTCGTATCCTGCATGAATTGTCTGATCAACTCCGTCCACAAGCTGCTGCTATCGCCAATAACGCTTGGAT
TTTGGGCCACATGGACTTCATTCGTGGGAAATACCTCTATCTCCAAGATAAGAAGGCAGTTATCCCAAAGATTAGTGACA
ACCAAACACTCCAACTGCTTAACGTTCGTCACCCGCTTTTGGTCAATCCAGTAGCCAATGATTTACGCTTTGATGAGGAC
CTCACAGCCATTGTCATTACAGGTCCCAATACCGGTGGTAAAACGGTCATGCTTAAAACTCTAGGATTAGCACAACTAAT
GGCTCAATCTGGTCTTCCAATTTTGGCTGATAAGGGCAGTCGTGTAGCCATTTTCCAAGAGATTTTTGCGGACATCGGGG
ATGAACAGTCTATTGAACAGAGTTTGTCAACATTCTCTAGTCACATGACACATATTGTTGAGATTCTGGACGCTGCCGAT
AGCAACAGTCTTGTCTTGGTCGATGAGCTCGGGGCTGGTACTGACCCTCAGGAAGGGGCTAGTCTAGCCATGGCAATCCT
AGAGCACCTCCGTTTGAGCCAGATTAAAACCATGGCTACTACTCACTATCCTGAGCTTAAGGCCTATGGGATTGAGACGC
AACATGTGGAAAATGCCAGCATGGAGTTTGACACAGCGACTTTAAGCCCTACCTATCGTTTTATGCAGGGGGTTCCTGGT
CGCTCTAACGCTTTTGAGATTGCTCGCCGCCTCGGTTTGAATGAGATTATTGTCAAAGAAGCAGAAAACCTCACAGATAC
TGATAGTGATGTCAACCGTATCATCGAGCAACTTGAAGCCCAAACTGTGGAAACACAAAAACGTCTGGAGCACATCAAGG
ACGTTGAGCAAGAAAACCTTAAATTCAACCGTGCGGTCAAGAAACTCTATAATGAATTCTCCCATGAGTACGACAAGGAA
CTCGAAAAGGCTCAGAAAGAAATTCAAGAGATGGTGGATACAGCTTTGGCTGAGAGCGATAGTATTCTCAAAAATCTCCA
CGATAAGAGTCAACTCAAGCCTCATGAAGTTATCGACGCCAAAGGAAAACTCAAGAAACTTGCCCCTCAAGTGGACCTCT
CTAAGAATAAAGTCCTTCGTAAGGCCAAGAAAGAAAAGGCTGCGCGTGCCCCTCGTATCGGAGATGATATCATCGTTACC
GCCTATGGTCAACGTGGTACCCTTACCAGTCAAGCCAAAAATGGTAACTGGGAAGCCCAGGTAGGTCTCATCAAGATGAC
ACTCAAGGCGGATGAATTCACTCTTGTTCGTGCCCAAGCGGAAGCCCAACAACCTAAGAAGAAACAGATTAACGTGGTTA
AAAAAGCCAAAAAGTCATCTGGCGGTCCTCGTGCCCGTCTAGACCTTCGTGGGAAACGTTACGAAGAAGCCATGCAAGAG
CTTGATGCCTTTATTGACCAAGCCCTACTTAATAACATGAGTCAGGTGGACATCATCCACGGTATTGGTACAGGTGTCAT
CCGTGATGCTGTTACCAAATATCTCCGCCGTCATCGCCATGTTAAAAGTTTTGAATATGCCCCACAAAGTGCCGGTGGTT
CCGGATGTACCATTGCAACCTTAGGGTAA

Domains

Predicted by InterProScan.

MutS2 and Smr-associated SH3 domain (MSSS)

(633-672)

MutS domain V (MutS_V)

(324-505)

Smr domain (Smr)

(707-781)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutS/mutS2 Bacillus subtilis subsp. subtilis str. 168

39.47

100

0.4