Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   HRD51_RS00470 Genome accession   NZ_CP054019
Coordinates   170224..172032 (+) Length   602 a.a.
NCBI ID   WP_235091860.1    Uniprot ID   -
Organism   Streptomyces sp. A1-5     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 165224..177032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRD51_RS00460 (HRD51_00440) - 167016..168047 (-) 1032 WP_067357063.1 GDP-mannose 4,6-dehydratase -
  HRD51_RS00465 (HRD51_00445) - 168435..170246 (+) 1812 WP_235091859.1 ABC transporter ATP-binding protein -
  HRD51_RS00470 (HRD51_00450) rcrQ 170224..172032 (+) 1809 WP_235091860.1 ABC transporter ATP-binding protein Regulator
  HRD51_RS00475 (HRD51_00455) ccrA 172174..173523 (+) 1350 WP_205360365.1 crotonyl-CoA carboxylase/reductase -
  HRD51_RS00480 (HRD51_00460) - 174248..175468 (-) 1221 WP_235091861.1 HAMP domain-containing sensor histidine kinase -
  HRD51_RS00485 (HRD51_00465) cseB 175474..176175 (-) 702 WP_235091862.1 two-component system response regulator CseB -
  HRD51_RS00490 (HRD51_00470) - 176197..176652 (-) 456 WP_205360370.1 hypothetical protein -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 65101.90 Da        Isoelectric Point: 7.2612

>NTDB_id=397177 HRD51_RS00470 WP_235091860.1 170224..172032(+) (rcrQ) [Streptomyces sp. A1-5]
MVSADSSSRGRRSPARHMLGLLRPHRVLVSVAVALGIGGVALNAAGPILLGRATDLVFDGIRHNHGSGGVDFDAIARVLL
FALVLFVTASLLTLFQGRLVSAVVQRVVFALRRSVEAKLARLPLRYFDRHPAGEVLSRVTNDVDNLQQTLQQTLSQLITA
VFSVLSMLVLMLVISPLLALIMLACLPVSVVLTARISRRAQPRFARQWSATGALNAHVEEVYTGHALVKGFGRREQAERA
FDEHNEALYRAGARAQFVSGAIEPSMMFVSNLGYVVVAVVGALRVVAGTLSIGDVQAFILYCRQFSQPIVEVAGIAARLQ
SALASAERIQELLDADEQRPDSDHPARLDKVGGHVEFEKVHFRYSPGTPLIEDLSLTVEPGRTVAVVGPTGAGKTTLGNL
LMRFYEIDSGRILLDGTDITALTREDLRSHIGLVLQDAWLFSGTIAENIAYGRPDATREEIVAAARATCADRFIRTLPDG
YDTVLDEESTNISAGEKQLITIARAFLARPSILLLDEATSSVDTRTEALIQRAMHSLRAGRTSFVIAHRLSTIRDADLIL
VMEGGRIVEQGTHDQLLAAAGPYARLHTAVEHGAGLEDAAPR

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=397177 HRD51_RS00470 WP_235091860.1 170224..172032(+) (rcrQ) [Streptomyces sp. A1-5]
ATGGTCTCGGCGGACAGCTCTAGCCGCGGGCGGCGCAGCCCCGCCCGCCACATGCTGGGCCTCCTGCGGCCGCACCGTGT
CCTGGTTTCCGTGGCGGTCGCCCTCGGGATCGGCGGCGTCGCGCTCAACGCGGCGGGCCCGATACTCCTCGGCAGGGCCA
CCGACCTCGTCTTCGACGGCATCCGGCACAACCACGGATCCGGCGGAGTCGACTTCGACGCGATCGCCCGGGTGTTGCTG
TTCGCGCTCGTGCTCTTCGTCACCGCCTCCTTGCTCACCCTCTTCCAGGGCCGGCTGGTCTCGGCCGTCGTGCAGCGTGT
GGTCTTCGCGCTGCGCCGGTCCGTGGAGGCCAAGCTCGCCCGCCTGCCGCTGCGGTACTTCGACCGCCACCCGGCGGGTG
AGGTGCTCAGCCGGGTGACCAATGACGTCGACAACCTCCAGCAGACCCTCCAGCAGACCCTCAGCCAGCTGATCACGGCG
GTGTTCTCCGTACTGAGCATGCTGGTGCTGATGCTCGTCATCTCGCCGCTGCTGGCACTGATCATGCTGGCCTGTCTGCC
GGTGTCGGTCGTGCTCACGGCCCGGATCAGCAGGCGCGCACAGCCGCGGTTCGCCCGTCAGTGGTCCGCGACCGGAGCGC
TGAACGCCCACGTCGAGGAGGTCTACACCGGTCACGCGCTGGTCAAGGGCTTCGGGCGGCGCGAGCAGGCCGAGCGCGCC
TTCGACGAGCACAACGAAGCCCTCTACCGCGCCGGCGCACGGGCCCAGTTCGTCTCGGGCGCCATCGAGCCGTCGATGAT
GTTCGTCTCCAACCTCGGCTATGTCGTGGTGGCGGTCGTCGGCGCGCTGCGCGTGGTCGCCGGGACCCTGTCCATCGGTG
ACGTCCAGGCGTTCATCCTCTACTGCCGGCAGTTCAGCCAGCCGATCGTCGAGGTCGCCGGCATCGCCGCCCGCCTGCAG
TCCGCCCTCGCCTCCGCGGAGCGGATCCAGGAGCTCCTGGACGCGGACGAGCAGCGACCCGACTCCGACCACCCCGCACG
TCTCGACAAGGTCGGCGGGCATGTCGAGTTCGAGAAGGTCCACTTCCGCTACTCCCCCGGCACCCCGCTCATCGAGGACC
TCTCCCTCACCGTCGAACCCGGCCGGACCGTGGCGGTCGTCGGTCCGACCGGCGCCGGCAAGACCACCCTGGGCAACCTC
CTCATGCGCTTCTACGAGATCGACAGCGGGCGCATCCTCCTCGACGGCACGGACATCACCGCCCTGACCCGCGAGGACCT
GCGCTCCCACATCGGCCTGGTGCTCCAGGACGCCTGGCTCTTCTCCGGCACCATCGCCGAGAACATCGCCTACGGACGCC
CCGACGCCACCCGCGAGGAGATCGTGGCCGCCGCCCGCGCCACCTGCGCCGACCGCTTCATCCGCACCCTGCCGGACGGC
TACGACACCGTCCTGGACGAGGAGTCGACCAATATCAGCGCGGGCGAGAAGCAGCTCATCACCATCGCGCGGGCCTTCCT
GGCCCGGCCCTCGATCCTGCTCCTGGACGAGGCGACCAGCTCCGTCGACACCCGCACGGAGGCGCTCATCCAACGCGCGA
TGCACTCGCTGCGCGCGGGCCGCACCAGCTTCGTCATCGCGCACCGCCTCTCCACCATCCGCGACGCGGACCTGATCCTC
GTCATGGAAGGCGGCCGCATCGTCGAGCAGGGCACCCACGACCAGCTGCTGGCCGCCGCAGGGCCCTACGCCCGGCTGCA
CACGGCCGTGGAGCACGGTGCCGGGCTGGAGGACGCGGCACCCCGTTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(32-308)

ABC transporter (ABC_tran)

(372-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

42.314

96.179

0.407