Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   FOC63_RS09490 Genome accession   NZ_CP054015
Coordinates   1882306..1884042 (+) Length   578 a.a.
NCBI ID   WP_009854142.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain FDAARGOS_755     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1877306..1889042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC63_RS09470 (FOC63_09470) glyA 1877666..1878916 (+) 1251 WP_043878561.1 serine hydroxymethyltransferase -
  FOC63_RS09475 (FOC63_09475) - 1878961..1879938 (+) 978 WP_009854139.1 nucleoid-associated protein -
  FOC63_RS09480 (FOC63_09480) - 1879938..1880540 (+) 603 WP_009854140.1 lysozyme family protein -
  FOC63_RS09485 (FOC63_09485) - 1880580..1882304 (+) 1725 WP_043878562.1 ABC transporter ATP-binding protein -
  FOC63_RS09490 (FOC63_09490) rcrQ 1882306..1884042 (+) 1737 WP_009854142.1 ABC transporter ATP-binding protein Regulator
  FOC63_RS09495 (FOC63_09495) - 1884181..1885635 (-) 1455 WP_043878563.1 alpha-amylase -
  FOC63_RS09500 (FOC63_09500) - 1885789..1886403 (+) 615 WP_244951853.1 class I SAM-dependent methyltransferase -
  FOC63_RS09505 (FOC63_09505) - 1886448..1887056 (-) 609 WP_009854145.1 TVP38/TMEM64 family protein -
  FOC63_RS09510 (FOC63_09510) - 1887708..1888541 (+) 834 WP_009854147.1 PRD domain-containing protein -
  FOC63_RS09515 (FOC63_09515) - 1888561..1888884 (+) 324 WP_009854148.1 PTS lactose/cellobiose transporter subunit IIA -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 63882.81 Da        Isoelectric Point: 6.0584

>NTDB_id=397164 FOC63_RS09490 WP_009854142.1 1882306..1884042(+) (rcrQ) [Streptococcus gallolyticus strain FDAARGOS_755]
MKAKNQNHTSRRLFKDLLSQKGLVLGATLGTIAQVALTVYLPILIGNAVDVVLSPKSISLIVPIVAKMSVVVALNTLVQW
VNPLIYNRLTFGYIYTLRQKVMEKLNQMPISYLDKKSSGDLVSRVTTDAEQLSNGLLMVFNQFFIGILTIIITIVTMADI
DLLMLGLVLILTPLSLFLARFIAQKSYHLYQNQTKSRGQQTQYIEEMIRQESLLHTFNAQDMAIDTFTTINDTYADYSQG
AIFYSSTVNPSTRFINSLIYALLAGVGALRIMSGAFTVGQLTTFLNYVNQYTKPFNDISSVLSELQSAIACAERLYAILD
EEIEPLPVKAHLNADSIQGQIEFKDVSFGYTSQNTLINHLNLSIPAASKVAIVGPTGAGKSTLINLLMRFYEVNSGAIYL
DGVSMADYSVSELRQQIGMVLQETWLKVGTIHDNIAYGNPDATREEVIAAAKAANADFFIRQLPNGYDTYLADAGASLSQ
GQRQLLTIARIFVKLPKILILDEATSSIDTRTEVLIQEAFEKLMQGRTSFIIAHRLSTIQSADFILVMVDGDIVEHGTHD
DLMAKQGVYYQMQTAQAG

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=397164 FOC63_RS09490 WP_009854142.1 1882306..1884042(+) (rcrQ) [Streptococcus gallolyticus strain FDAARGOS_755]
ATGAAGGCAAAAAATCAAAATCATACTAGCCGCCGTTTGTTCAAAGATCTTTTATCACAAAAAGGACTTGTTCTTGGTGC
CACACTTGGAACGATTGCGCAAGTCGCTCTGACCGTTTATTTGCCTATTTTGATTGGGAATGCGGTGGACGTTGTTTTAT
CTCCGAAATCAATTAGTTTAATTGTGCCAATTGTAGCGAAAATGAGTGTTGTTGTCGCTTTGAATACCTTGGTGCAATGG
GTGAATCCATTGATTTATAACCGTCTAACGTTTGGTTATATTTACACATTGCGTCAAAAAGTCATGGAAAAATTAAACCA
GATGCCGATTTCTTATCTTGACAAGAAAAGTTCAGGTGATTTGGTTAGTCGTGTGACAACTGATGCCGAACAATTGAGCA
ATGGTCTGTTAATGGTGTTCAATCAATTTTTCATTGGTATTCTAACGATTATCATTACCATTGTGACAATGGCTGATATT
GATTTGTTAATGCTTGGTTTGGTTCTAATTTTGACACCATTATCACTTTTCTTAGCGCGTTTTATTGCTCAAAAGAGTTA
TCATCTTTATCAAAATCAAACAAAATCACGCGGGCAACAAACGCAGTATATTGAAGAAATGATTCGTCAAGAAAGTTTAC
TCCACACCTTCAATGCGCAAGATATGGCTATTGACACTTTCACGACGATTAATGATACTTATGCTGATTACTCACAAGGA
GCTATTTTCTATTCTTCAACGGTTAATCCGTCAACGCGTTTCATTAATAGCTTGATTTATGCTCTTTTGGCAGGAGTAGG
GGCACTTCGGATTATGTCAGGTGCTTTTACAGTTGGGCAATTGACAACTTTCTTGAATTATGTCAATCAATACACCAAGC
CATTTAATGATATTTCATCCGTTTTGTCAGAATTGCAGAGCGCCATTGCCTGTGCAGAACGTCTCTACGCTATTCTAGAC
GAAGAAATTGAGCCTCTTCCAGTAAAAGCTCATCTTAATGCAGATAGTATTCAAGGACAAATTGAATTCAAAGATGTGTC
GTTTGGCTATACTAGCCAAAATACCTTGATTAACCACCTTAATTTATCAATCCCAGCGGCTTCAAAAGTGGCTATCGTTG
GACCAACGGGTGCAGGAAAATCAACTTTAATCAATCTTTTAATGCGTTTTTATGAAGTCAATAGCGGAGCTATTTATTTG
GATGGCGTTTCTATGGCAGATTATTCTGTGTCAGAATTGCGCCAACAAATCGGTATGGTATTGCAAGAAACGTGGCTGAA
AGTTGGAACGATTCACGATAATATTGCATATGGAAATCCTGATGCTACACGAGAAGAAGTCATTGCTGCCGCAAAAGCAG
CCAATGCTGATTTCTTTATTCGTCAGTTGCCAAATGGTTACGATACTTATCTGGCTGATGCAGGAGCGTCATTGTCGCAA
GGACAACGTCAGCTGTTAACGATTGCTCGAATTTTTGTCAAACTACCAAAAATCTTAATTCTCGACGAAGCAACCTCATC
TATCGATACTCGAACAGAAGTATTGATTCAAGAAGCTTTTGAAAAATTAATGCAAGGAAGGACAAGTTTTATCATTGCAC
ACCGCTTGTCAACCATTCAATCAGCTGATTTTATTTTAGTCATGGTAGATGGTGACATTGTTGAACATGGTACGCATGAC
GACCTAATGGCAAAACAAGGCGTTTATTACCAAATGCAAACAGCCCAAGCAGGGTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(27-294)

ABC transporter (ABC_tran)

(358-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

37.997

100

0.381

Multiple sequence alignment