Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   FOC63_RS08615 Genome accession   NZ_CP054015
Coordinates   1705466..1707343 (+) Length   625 a.a.
NCBI ID   WP_009853978.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain FDAARGOS_755     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1700466..1712343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC63_RS08600 (FOC63_08600) - 1701121..1703040 (+) 1920 WP_009853975.1 ABC-F family ATP-binding cassette domain-containing protein -
  FOC63_RS08605 (FOC63_08605) - 1703276..1703722 (+) 447 WP_009853976.1 MarR family winged helix-turn-helix transcriptional regulator -
  FOC63_RS08610 (FOC63_08610) - 1703715..1705466 (+) 1752 WP_009853977.1 ABC transporter ATP-binding protein -
  FOC63_RS08615 (FOC63_08615) rcrQ 1705466..1707343 (+) 1878 WP_009853978.1 ABC transporter ATP-binding protein Regulator
  FOC63_RS08620 (FOC63_08620) - 1707475..1707891 (+) 417 WP_009853979.1 cupin domain-containing protein -
  FOC63_RS08625 (FOC63_08625) - 1708027..1708995 (+) 969 WP_014620029.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  FOC63_RS08630 (FOC63_08630) - 1709027..1710031 (+) 1005 WP_009853981.1 alpha-ketoacid dehydrogenase subunit beta -
  FOC63_RS11420 - 1710085..1710213 (+) 129 Protein_1644 biotin/lipoyl-containing protein -
  FOC63_RS08635 (FOC63_08635) - 1710403..1711440 (+) 1038 Protein_1645 dihydrolipoamide acetyltransferase -

Sequence

Protein


Download         Length: 625 a.a.        Molecular weight: 70015.72 Da        Isoelectric Point: 7.4645

>NTDB_id=397160 FOC63_RS08615 WP_009853978.1 1705466..1707343(+) (rcrQ) [Streptococcus gallolyticus strain FDAARGOS_755]
MAQTKKEINKQDTLKRVLAYVLKNYKWRFLLVLVLILVTALCMVRFSLFMQTLIDSYITPLLSAKNPDFSGLAHAIFQLI
IIGIIGVLSSYTYNRLMVYVGQGTMRRIRIDLFTHMERLPIKYFDTHAHGDIMSIYTNDVDTLRQLISQSIPQVVNSFFS
IVVTFTSMLILNVPLSMLSLFMVVILLTVARKIASQSSKHFHNQQNDLGRVNGFIEEMMDGQKVVKVFNHEERAKEDFRK
INQQLRYSATNANIYANILMPVSANIGHISYVLCAMLGATLALHGYAGLTLGTLVSFLALNRSFANPITQISQQINSVIM
AMAGADRVFNLLDAEVETDEGYVELVNATEDAAGNLQEVEKTTGMWAWKHPHEDGTVTYHKQEGRVTFSDVTFGYNDDKM
VLHDINLFAEPGQKIAFVGSTGAGKTTITNLINRFYDIQEGKIHYDGINIRKIKKADLRRSLGIVLQDTHLFTGTVMDNI
RYGRLNATDDECIAAAKLANAHDFIKRLPEGYDTILTGDGSNLSQGQRQLLAIARAAVANPPALILDEATSSIDTRTEVH
VQEGMDALMKGRTTFVIAHRLSTVRNADCIMVLEQGRIIERGNHDELIAQKGRYYQLYTGNAISE

Nucleotide


Download         Length: 1878 bp        

>NTDB_id=397160 FOC63_RS08615 WP_009853978.1 1705466..1707343(+) (rcrQ) [Streptococcus gallolyticus strain FDAARGOS_755]
ATGGCTCAAACCAAAAAAGAAATTAATAAACAAGATACGCTAAAACGTGTGTTGGCTTATGTCTTGAAAAATTATAAATG
GCGCTTCTTGCTAGTATTGGTTTTGATTTTAGTAACAGCGCTTTGTATGGTACGCTTTAGTTTGTTCATGCAAACATTGA
TTGATAGTTATATTACACCTCTTTTATCTGCTAAAAATCCAGATTTTTCAGGGTTAGCGCACGCTATTTTTCAGTTAATC
ATTATTGGTATCATTGGTGTTCTAAGTTCTTACACTTATAACCGTTTGATGGTTTATGTTGGACAAGGAACAATGCGTCG
TATTCGTATTGATTTGTTCACTCATATGGAACGCTTGCCAATCAAATATTTTGATACACATGCCCACGGTGATATCATGT
CTATCTATACTAACGACGTTGATACACTTCGTCAGTTGATTAGCCAAAGTATTCCGCAAGTGGTCAATTCATTCTTTTCA
ATCGTGGTGACTTTTACAAGCATGCTTATTCTTAACGTGCCATTGTCAATGTTATCACTATTTATGGTTGTGATTTTGTT
AACTGTTGCGCGTAAAATCGCTTCGCAATCGTCTAAACATTTCCATAACCAACAAAATGACCTTGGTCGTGTCAATGGTT
TCATTGAAGAAATGATGGACGGTCAAAAAGTGGTTAAAGTTTTCAATCACGAAGAACGTGCTAAAGAAGATTTCCGAAAA
ATCAATCAACAGCTCCGCTATTCTGCCACAAATGCCAATATCTATGCTAATATTTTGATGCCAGTATCAGCTAACATTGG
ACATATTTCCTATGTACTTTGTGCCATGCTTGGGGCAACCCTAGCACTTCATGGTTATGCTGGATTGACTTTGGGAACAT
TAGTTTCTTTCCTAGCGCTTAACCGTAGTTTTGCAAACCCAATCACACAAATCAGTCAACAAATCAACTCAGTTATCATG
GCGATGGCTGGTGCTGACCGTGTCTTTAACCTACTTGATGCCGAAGTGGAAACTGATGAAGGTTATGTTGAATTGGTAAA
TGCTACTGAGGACGCTGCTGGTAATCTTCAAGAAGTTGAAAAAACAACTGGTATGTGGGCTTGGAAACATCCACACGAAG
ACGGGACTGTGACTTATCACAAGCAAGAAGGTCGTGTAACCTTCTCAGATGTAACCTTTGGTTATAACGATGATAAAATG
GTTTTACATGACATTAATTTGTTTGCGGAACCTGGTCAAAAAATTGCCTTTGTTGGGTCAACTGGTGCTGGTAAAACAAC
CATTACAAACTTGATTAATCGTTTTTACGATATTCAAGAAGGTAAGATTCATTACGACGGTATTAACATTCGTAAAATCA
AAAAAGCTGATCTTCGTCGTAGTTTAGGGATTGTATTGCAAGATACGCACCTCTTTACAGGAACGGTTATGGATAATATC
CGTTACGGACGTTTGAATGCGACTGATGACGAATGTATTGCTGCGGCTAAGTTAGCTAATGCACATGATTTCATTAAACG
TTTGCCAGAAGGTTACGATACCATTTTGACAGGTGACGGAAGTAATTTATCTCAAGGACAACGTCAATTGCTTGCGATTG
CACGTGCAGCCGTGGCAAATCCACCTGCTTTGATTTTGGATGAAGCAACATCATCAATCGATACGCGTACCGAAGTTCAC
GTCCAAGAAGGTATGGATGCGTTGATGAAGGGTCGTACAACCTTTGTTATCGCTCACCGCTTGTCAACAGTTCGCAATGC
GGATTGTATCATGGTTCTTGAACAAGGACGTATCATCGAACGTGGTAACCACGACGAATTGATTGCGCAAAAAGGACGTT
ATTACCAACTTTACACAGGTAACGCCATTAGCGAATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(30-304)

ABC transporter (ABC_tran)

(402-551)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.032

99.2

0.387