Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutS/mutS2   Type   Machinery gene
Locus tag   TTJL18_RS02000 Genome accession   NC_017587
Coordinates   348381..350615 (+) Length   744 a.a.
NCBI ID   WP_014629083.1    Uniprot ID   -
Organism   Thermus thermophilus JL-18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 343381..355615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TTJL18_RS01980 (TtJL18_0396) - 344638..345957 (+) 1320 WP_014629079.1 sugar ABC transporter permease -
  TTJL18_RS01985 (TtJL18_0397) - 345962..346249 (+) 288 WP_014629080.1 nucleotidyltransferase family protein -
  TTJL18_RS01990 (TtJL18_0398) - 346246..346581 (+) 336 WP_014629081.1 DUF86 domain-containing protein -
  TTJL18_RS01995 (TtJL18_0399) - 346578..348289 (+) 1712 Protein_387 glycoside hydrolase family 13 protein -
  TTJL18_RS02000 (TtJL18_0400) mutS/mutS2 348381..350615 (+) 2235 WP_014629083.1 endonuclease MutS2 Machinery gene
  TTJL18_RS02005 (TtJL18_0401) - 350590..351243 (-) 654 WP_014629084.1 TIGR00730 family Rossman fold protein -
  TTJL18_RS02010 (TtJL18_0402) murI 351318..352091 (-) 774 WP_014629085.1 glutamate racemase -
  TTJL18_RS02015 (TtJL18_0403) metK 352186..353364 (+) 1179 WP_041444420.1 methionine adenosyltransferase -
  TTJL18_RS02020 (TtJL18_0404) - 353465..354508 (-) 1044 WP_014629087.1 GGDEF domain-containing protein -

Sequence

Protein


Download         Length: 744 a.a.        Molecular weight: 82409.43 Da        Isoelectric Point: 7.5546

>NTDB_id=39714 TTJL18_RS02000 WP_014629083.1 348381..350615(+) (mutS/mutS2) [Thermus thermophilus JL-18]
MRDVLEVLEFPRVRALLAERAKTPLGRELALALAPLSQEEAKRRHELTGEALSYPYALPEAGALREAYGRALAGARLSGP
ELLRAAKALEEAMALKEELLPLKNALSQVAEGIGDHTPFLERVRKALDEEGAVKDEASPRLAQIRKELRPLRQQILDRLY
ALIDRHREAFQDRFVTLRRERYCVPVRAGMAQKVPGILLDESESGATLFIEPFSVVKLNNRLQALRLKEEEEVNRILRDL
SERLAKDEGVPKTLEALGLLDLVQAQAALARDLGLSRPALGERYELYRAFHPLIPNAVRNSFALDERNRILLISGPNMGG
KTALLKTLGLAVLMAQSGLFVAAEKALLAWPDRVYADIGDEQSLQENLSTFAGHLRRLKEMLEEATPNSLVLIDELGSGT
DPEEGAALSQAILEALLERGVKGMVTTHLSPLKAFAQGREGIQNASMRFDLEALRPTYELVLGVPGRSYALAIARRLALP
EEVLKRAEALLPEGGRLEALLERLEAERLALEAERERLRRELSQVERLRKALAEREARFEEERAERLKALEEEVRAELLK
VEAELKALKEKARTEGKRDALRELMALRERYAKKAPPPPPPPGLAPGVLVEVPSLGKRGRVVELRGEEVLVQVGPLKMSL
KPQEVKPLPEAEPGKPLLAKPRREVKEVDLRGLTVAEALLEVDQALEEARALGLSTLRLLHGKGTGALRQAIREALRRDK
RVESFADAPPGEGGHGVTVVALRP

Nucleotide


Download         Length: 2235 bp        

>NTDB_id=39714 TTJL18_RS02000 WP_014629083.1 348381..350615(+) (mutS/mutS2) [Thermus thermophilus JL-18]
GTGCGGGACGTCCTCGAGGTCCTGGAGTTCCCCCGGGTCCGGGCCCTGCTGGCGGAGAGGGCCAAGACCCCCCTGGGCCG
GGAGCTCGCCCTGGCCCTTGCCCCCCTCTCCCAGGAGGAGGCGAAGCGGCGGCACGAGCTCACGGGGGAGGCCCTCAGCT
ACCCCTACGCCCTCCCCGAGGCGGGGGCCTTAAGGGAGGCCTACGGGAGGGCCCTCGCGGGGGCGAGGCTTTCCGGCCCC
GAGCTCCTGCGCGCGGCCAAGGCCCTGGAGGAGGCCATGGCCCTGAAGGAGGAGCTCCTTCCCCTGAAAAACGCCTTAAG
CCAGGTGGCGGAGGGCATCGGGGACCACACCCCCTTCCTGGAGAGGGTGAGGAAAGCCCTGGACGAGGAAGGGGCGGTGA
AGGACGAGGCGAGCCCGAGGCTTGCCCAGATCCGCAAGGAGCTTAGGCCCCTCCGCCAGCAGATCCTGGACCGCCTCTAC
GCCCTCATAGACCGCCACAGGGAGGCCTTCCAGGACCGCTTCGTCACCTTAAGGCGGGAGCGCTACTGCGTCCCCGTGAG
GGCGGGGATGGCCCAGAAGGTGCCGGGGATCCTCCTGGACGAGTCCGAGTCGGGGGCGACCCTCTTCATAGAGCCCTTCT
CCGTGGTCAAGCTCAACAACCGCCTCCAGGCCCTGAGGCTAAAGGAGGAGGAGGAGGTGAACCGCATCCTCCGGGACCTC
TCCGAGAGGCTCGCCAAGGACGAGGGCGTGCCGAAGACCCTGGAGGCCCTGGGCCTTTTGGACCTCGTCCAGGCCCAGGC
CGCCTTGGCCCGGGACCTGGGGCTTTCCCGCCCTGCTCTTGGAGAGCGGTACGAGCTCTACCGGGCCTTTCACCCCCTGA
TCCCGAACGCCGTGCGGAACTCCTTCGCCCTGGACGAGAGGAACCGCATCCTCCTCATCTCCGGCCCCAACATGGGGGGG
AAGACCGCCCTCCTCAAGACCCTGGGCCTTGCCGTCCTCATGGCCCAGTCCGGCCTCTTCGTGGCGGCGGAGAAGGCCCT
TTTGGCCTGGCCCGACCGGGTCTATGCCGACATCGGGGACGAGCAGTCCCTTCAGGAGAACCTCTCCACCTTCGCCGGGC
ACTTAAGGCGCCTCAAGGAGATGCTGGAGGAGGCCACCCCGAATAGCCTCGTGCTCATTGACGAGCTCGGAAGCGGCACC
GACCCCGAGGAGGGGGCGGCCCTTTCCCAGGCCATCCTGGAGGCCCTCCTGGAGAGGGGGGTCAAGGGGATGGTCACCAC
CCACCTCTCCCCCCTGAAGGCCTTCGCCCAGGGAAGGGAGGGGATCCAGAACGCCTCCATGCGCTTTGACCTCGAGGCCC
TCCGCCCCACCTACGAGCTCGTCCTCGGGGTGCCGGGGCGGAGCTACGCTTTGGCCATCGCGAGAAGGCTCGCCCTCCCC
GAGGAGGTCCTCAAGCGGGCCGAGGCCCTTTTGCCCGAAGGGGGGCGGCTGGAGGCCCTTCTGGAGAGGCTCGAGGCCGA
GCGCCTGGCCCTGGAGGCGGAGCGGGAGCGCCTGAGGCGGGAGCTTTCCCAGGTGGAGAGGCTGCGCAAGGCCCTGGCCG
AGCGGGAGGCCCGTTTTGAGGAGGAGCGGGCGGAAAGGCTCAAGGCCCTCGAGGAGGAGGTGCGGGCCGAGCTCCTCAAG
GTGGAGGCCGAGCTCAAGGCCCTCAAGGAGAAGGCCAGGACCGAGGGCAAGCGGGACGCCCTCCGGGAGCTCATGGCCCT
CCGGGAGCGCTACGCCAAGAAGGCCCCGCCGCCCCCGCCTCCGCCGGGCCTCGCCCCCGGCGTCTTGGTGGAGGTGCCGT
CCTTGGGCAAACGGGGCCGGGTGGTGGAGCTCAGGGGGGAGGAGGTCCTGGTCCAGGTGGGCCCCCTGAAGATGAGCCTC
AAGCCCCAGGAGGTGAAGCCCCTTCCCGAGGCCGAACCGGGCAAGCCCCTCCTCGCCAAGCCCCGACGGGAGGTGAAGGA
GGTGGACCTCCGGGGCCTCACGGTGGCCGAGGCCCTCCTGGAGGTGGACCAGGCCCTGGAGGAGGCGCGGGCCCTGGGCC
TTTCCACCCTCCGCCTCCTCCACGGCAAGGGGACGGGGGCCTTAAGGCAGGCCATCCGGGAGGCCCTCCGCCGGGACAAG
CGGGTGGAAAGCTTCGCCGACGCCCCGCCCGGCGAAGGGGGGCATGGGGTTACCGTGGTGGCGCTTCGGCCTTGA

Domains

Predicted by InterProScan.

MutS domain V (MutS_V)

(312-490)

MutS2 and Smr-associated SH3 domain (MSSS)

(606-644)

Smr domain (Smr)

(668-743)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutS/mutS2 Bacillus subtilis subsp. subtilis str. 168

35.419

100

0.38

Multiple sequence alignment