Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   GH772_RS12040 Genome accession   NZ_CP045777
Coordinates   2013424..2014203 (+) Length   259 a.a.
NCBI ID   WP_000421288.1    Uniprot ID   Q81WK7
Organism   Bacillus paranthracis strain CFSAN068816     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2008424..2019203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GH772_RS12020 (GH772_11845) trmFO 2009078..2010382 (+) 1305 WP_002028254.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  GH772_RS12025 (GH772_11850) xerC 2010448..2011347 (+) 900 WP_001101229.1 tyrosine recombinase XerC -
  GH772_RS12030 (GH772_11855) hslV 2011390..2011932 (+) 543 WP_000526271.1 ATP-dependent protease proteolytic subunit HslV -
  GH772_RS12035 (GH772_11860) hslU 2011955..2013346 (+) 1392 WP_000550081.1 ATP-dependent protease ATPase subunit HslU -
  GH772_RS12040 (GH772_11865) codY 2013424..2014203 (+) 780 WP_000421288.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  GH772_RS12045 (GH772_11870) rpsB 2014554..2015255 (+) 702 WP_000111483.1 30S ribosomal protein S2 -
  GH772_RS12050 (GH772_11875) tsf 2015359..2016246 (+) 888 WP_001018580.1 translation elongation factor Ts -
  GH772_RS12055 (GH772_11880) pyrH 2016313..2017035 (+) 723 WP_000042663.1 UMP kinase -
  GH772_RS12060 (GH772_11885) frr 2017038..2017595 (+) 558 WP_000531500.1 ribosome recycling factor -
  GH772_RS12065 (GH772_11890) uppS 2017681..2018457 (+) 777 WP_000971301.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28774.05 Da        Isoelectric Point: 4.7947

>NTDB_id=397065 GH772_RS12040 WP_000421288.1 2013424..2014203(+) (codY) [Bacillus paranthracis strain CFSAN068816]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=397065 GH772_RS12040 WP_000421288.1 2013424..2014203(+) (codY) [Bacillus paranthracis strain CFSAN068816]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGCTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATTGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTACTAAACGACAAATTCTTACATGAACTTGCTAAATTGAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q81WK7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.081

100

0.811
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459

Multiple sequence alignment