Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   FOC71_RS08185 Genome accession   NZ_CP053999
Coordinates   1612878..1614647 (-) Length   589 a.a.
NCBI ID   WP_003072169.1    Uniprot ID   -
Organism   Streptococcus intermedius strain FDAARGOS_769     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1607878..1619647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC71_RS08150 (FOC71_08150) - 1608121..1608968 (-) 848 Protein_1589 homoserine O-succinyltransferase -
  FOC71_RS08155 (FOC71_08155) - 1609073..1609585 (-) 513 WP_003072179.1 adenine phosphoribosyltransferase -
  FOC71_RS08160 (FOC71_08160) - 1609709..1610404 (-) 696 WP_003072176.1 LrgB family protein -
  FOC71_RS08165 (FOC71_08165) - 1610397..1610777 (-) 381 WP_003072174.1 CidA/LrgA family protein -
  FOC71_RS08180 (FOC71_08180) - 1611504..1612505 (+) 1002 WP_003072170.1 YdcF family protein -
  FOC71_RS08185 (FOC71_08185) rcrQ 1612878..1614647 (-) 1770 WP_003072169.1 ABC transporter ATP-binding protein Regulator
  FOC71_RS08190 (FOC71_08190) - 1614657..1616393 (-) 1737 WP_003072167.1 ABC transporter ATP-binding protein -
  FOC71_RS08195 (FOC71_08195) endA 1616696..1617541 (-) 846 WP_003072166.1 DNA/RNA non-specific endonuclease Machinery gene
  FOC71_RS08200 (FOC71_08200) - 1617604..1617780 (-) 177 WP_003072163.1 DNA-directed RNA polymerase subunit beta -
  FOC71_RS08205 (FOC71_08205) murA 1617773..1619053 (-) 1281 WP_003072160.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  FOC71_RS08210 (FOC71_08210) - 1619091..1619321 (-) 231 WP_080564719.1 DUF1146 family protein -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 66131.30 Da        Isoelectric Point: 5.5213

>NTDB_id=397047 FOC71_RS08185 WP_003072169.1 1612878..1614647(-) (rcrQ) [Streptococcus intermedius strain FDAARGOS_769]
MKQHSFMRLWSYLKVYKLSVILAIFLKVVSIVMSVLEPFVLGLAITELTRNVLDIAKGVEGASINTTYVFWVMALYLLRG
LFYEIGAYYSNYFMTNAVQNTVRDMRNELSSKINQIPVSYFDKHQFGDLLGRFTSDVETVSNALQQSFLQVVNAVLTITL
VIGMVLYLNFQLALIVIASIPLTYFGATFILKKSQPYFKKQADTLGVMNGFVQENLTGFNVLKLYGREETSSDDFREITQ
NLQEVGFKASFISGLMMPILNAVSDLTYLLVAVVGGLQVIAGQLTIGNMQAFVQYVWQVNQPIQNLTQLAGQLQSAKSSL
DRIFQVLDEPDEVTDIKEQLEHDLTGQVSFQHVDFQYVESKPLIRNFNLEVKPGEMVAIVGPTGAGKTTLINLLMRFYDV
TAGSISVDGHDIRNLSRQDYRKQFGMVLQDAWLYEGTVKDNLRFGNLSATDEEIVDAAKAANVDHFIRTLPGGYNMEMNQ
ESSNISLGQKQLLTIARALLANPKILILDEATSSVDTRLELLIQKAMKNLMQGRTSFVIAHRLSTIQEADKILVLKDGQI
IEQGTHESLLADRGFYYDLYTSQFAKKEA

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=397047 FOC71_RS08185 WP_003072169.1 1612878..1614647(-) (rcrQ) [Streptococcus intermedius strain FDAARGOS_769]
ATGAAACAACATAGTTTTATGCGTTTGTGGAGTTACTTAAAAGTTTATAAACTCTCAGTAATCCTTGCTATCTTTTTGAA
GGTGGTGAGTATTGTGATGAGCGTGCTGGAGCCTTTTGTACTTGGTCTTGCTATTACAGAATTGACACGAAATGTGCTGG
ACATAGCAAAAGGAGTCGAAGGCGCCAGTATAAACACAACATATGTCTTTTGGGTAATGGCACTTTACCTTTTGCGTGGC
TTGTTCTATGAAATTGGGGCTTACTATTCTAATTATTTTATGACCAATGCAGTGCAAAATACAGTACGTGACATGCGCAA
TGAGTTGAGTTCTAAAATTAATCAAATTCCAGTTTCTTACTTTGATAAGCATCAATTTGGAGATTTGCTAGGGCGCTTTA
CCAGTGATGTAGAGACTGTTTCAAATGCGCTTCAACAATCATTCTTACAAGTTGTAAATGCGGTTTTGACCATTACCTTA
GTTATCGGAATGGTCTTGTATCTTAATTTTCAACTGGCTTTGATAGTGATTGCTAGCATTCCATTGACCTATTTTGGGGC
GACCTTTATTTTGAAAAAATCACAACCGTATTTTAAAAAGCAAGCAGATACGCTAGGTGTCATGAATGGATTTGTTCAAG
AAAATCTAACTGGTTTTAATGTGCTGAAACTCTATGGTCGTGAAGAAACATCTTCAGACGATTTTCGAGAAATCACGCAA
AATCTCCAAGAAGTCGGGTTCAAAGCTAGTTTTATTTCTGGCTTGATGATGCCAATTTTGAACGCAGTTTCAGATTTGAC
TTATCTGCTTGTAGCGGTCGTTGGTGGTTTGCAAGTTATTGCTGGACAATTAACAATTGGGAACATGCAAGCTTTTGTAC
AATATGTATGGCAAGTAAACCAGCCAATTCAAAATTTAACGCAGTTAGCTGGGCAATTACAAAGTGCTAAGTCTTCGCTG
GATCGTATTTTCCAAGTCTTAGATGAACCAGACGAAGTAACGGATATAAAAGAGCAATTAGAACATGATTTGACAGGACA
GGTTAGTTTTCAACATGTTGATTTTCAATATGTGGAAAGCAAACCGCTCATTCGCAACTTCAATTTGGAGGTAAAGCCGG
GTGAAATGGTAGCAATTGTCGGTCCGACCGGTGCTGGAAAGACCACCCTCATTAATCTACTTATGCGCTTTTACGATGTA
ACAGCAGGTTCAATTTCTGTTGATGGTCACGATATTCGCAACTTATCGCGCCAAGATTACCGCAAGCAATTTGGCATGGT
CTTGCAAGACGCTTGGCTCTATGAAGGAACAGTCAAGGATAATTTGCGTTTTGGAAATCTGAGTGCAACAGATGAAGAAA
TTGTGGACGCTGCCAAAGCTGCTAATGTCGATCATTTCATTCGGACACTTCCAGGTGGCTATAATATGGAAATGAATCAG
GAATCTAGCAATATCTCGCTGGGGCAAAAACAATTATTGACCATTGCGCGAGCACTATTGGCAAATCCCAAAATCTTAAT
TTTGGATGAAGCAACCTCGTCAGTTGATACGCGCTTAGAGCTCTTGATTCAAAAAGCGATGAAGAACCTCATGCAAGGAC
GGACAAGCTTTGTCATTGCTCACCGCTTATCGACAATTCAAGAAGCTGATAAAATTTTAGTCCTTAAAGACGGACAAATT
ATTGAACAAGGAACTCATGAATCACTTCTAGCTGATAGAGGCTTCTATTATGATTTATATACAAGCCAATTTGCTAAGAA
AGAAGCTTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(20-302)

ABC transporter (ABC_tran)

(365-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.771

100

0.441