Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   FOC71_RS06205 Genome accession   NZ_CP053999
Coordinates   1227025..1228773 (+) Length   582 a.a.
NCBI ID   WP_003072909.1    Uniprot ID   -
Organism   Streptococcus intermedius strain FDAARGOS_769     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1222025..1233773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC71_RS06185 (FOC71_06185) yihA 1222691..1223278 (+) 588 WP_003072916.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  FOC71_RS06190 (FOC71_06190) - 1223401..1224108 (+) 708 WP_003072914.1 glucosaminidase domain-containing protein -
  FOC71_RS06195 (FOC71_06195) - 1224284..1225081 (+) 798 WP_003072913.1 formate/nitrite transporter family protein -
  FOC71_RS06200 (FOC71_06200) - 1225299..1227044 (+) 1746 WP_003072911.1 ABC transporter ATP-binding protein -
  FOC71_RS06205 (FOC71_06205) rcrQ 1227025..1228773 (+) 1749 WP_003072909.1 ABC transporter ATP-binding protein Regulator
  FOC71_RS06210 (FOC71_06210) - 1228794..1230329 (-) 1536 WP_003072907.1 ATP-binding cassette domain-containing protein -
  FOC71_RS06215 (FOC71_06215) - 1230704..1231444 (-) 741 WP_003072905.1 amino acid ABC transporter ATP-binding protein -
  FOC71_RS06220 (FOC71_06220) - 1231444..1233621 (-) 2178 WP_003072904.1 ABC transporter substrate-binding protein/permease -

Sequence

Protein


Download         Length: 582 a.a.        Molecular weight: 64988.21 Da        Isoelectric Point: 6.2929

>NTDB_id=397033 FOC71_RS06205 WP_003072909.1 1227025..1228773(+) (rcrQ) [Streptococcus intermedius strain FDAARGOS_769]
MKTRYSKSGLKRLASDLLQQRWLFLLATIGTIVQVALTIYLPILIGNAVDSVLLPDASQHLLPILSKMGMVIVANTAIQW
LNPLIYNQLIYSYSQQLRNAVIQKIHHLPLAYLDCQGSGDLVSRLTTDVEQLNNGLLMVFNQFFVGVLTILVTIVTMAKI
DFFMMALVLLLTPLSMLIADFIARKSYKLFQKQTTARGLQTQFIEESLSQESLIQSFNAQEQFIANFTKGNESYANYSQE
AIFYSSTVNPATRFINALIYAMIVGFGAARIINGSSFTVGQLVTFLNYVNQYTKPFNDISSVMAELQSALACAERLYMIL
DEKEVVETGKEELTSEAIRGAVRFEHVRFGYEKDKPLIHDLNMTVPVGSKVAIVGPTGAGKSTLINLLMRFYNVDAGKIE
LDDKDITDYPRVSFRQQFGMVLQETWLKTGTIHENIAFGRPEASREEVIEAAKAANAHFFIQQLPHGYDTYLADAGDSLS
QGQRQLLTIARVFLAVPKILILDEATSSIDTRTEMLIQEAFNKLMVGRTSFIIAHRLSTIQNADIILVLVDGDIVEHGSH
QELMQAKGVYYQMQTAQGNLAV

Nucleotide


Download         Length: 1749 bp        

>NTDB_id=397033 FOC71_RS06205 WP_003072909.1 1227025..1228773(+) (rcrQ) [Streptococcus intermedius strain FDAARGOS_769]
ATGAAAACGAGGTATTCTAAAAGTGGTCTGAAACGCCTTGCAAGTGATTTATTGCAGCAGCGCTGGCTTTTCCTACTAGC
TACAATTGGAACGATTGTTCAGGTTGCCTTGACCATTTATTTGCCGATTTTAATTGGGAATGCAGTTGATAGTGTTCTAC
TTCCCGATGCAAGTCAGCATTTGCTTCCAATTCTCTCGAAAATGGGTATGGTGATTGTTGCCAATACAGCGATTCAATGG
CTCAATCCTTTAATCTATAATCAGTTGATTTATAGTTATAGTCAGCAACTTCGTAATGCTGTCATTCAAAAAATTCATCA
TCTTCCCTTGGCTTATCTTGATTGTCAAGGAAGTGGTGATTTAGTGAGTCGCTTAACTACGGATGTGGAGCAGTTAAATA
ATGGGTTGCTCATGGTTTTTAATCAATTTTTTGTAGGTGTACTGACTATTCTTGTAACAATTGTGACAATGGCAAAGATT
GACTTTTTCATGATGGCATTGGTCTTGCTATTAACTCCCTTATCTATGCTTATTGCAGATTTTATCGCTCGTAAAAGCTA
CAAGTTGTTTCAAAAACAGACAACAGCTCGGGGGCTTCAGACACAATTTATCGAAGAAAGTCTCTCTCAGGAAAGTTTGA
TTCAAAGTTTTAATGCTCAAGAGCAGTTCATTGCGAACTTTACAAAGGGGAATGAAAGCTATGCGAACTATTCTCAGGAA
GCGATTTTCTATTCCTCGACTGTCAATCCAGCAACACGTTTTATAAATGCTCTTATCTATGCGATGATTGTAGGATTTGG
TGCAGCTCGTATTATCAATGGCTCTAGTTTCACAGTTGGACAATTAGTAACTTTCTTAAATTATGTCAATCAATACACCA
AACCATTCAACGATATTTCGTCTGTTATGGCTGAACTACAAAGCGCCCTTGCTTGTGCAGAGCGCTTGTACATGATTTTA
GATGAAAAAGAAGTTGTAGAAACTGGAAAAGAAGAACTCACGAGTGAAGCAATACGGGGTGCGGTTCGTTTTGAGCACGT
CCGTTTTGGTTATGAAAAAGATAAACCCTTGATTCACGATTTAAACATGACCGTTCCAGTAGGAAGCAAAGTTGCTATTG
TCGGGCCAACTGGTGCTGGGAAATCGACTTTAATCAATCTCCTCATGCGTTTTTATAATGTAGATGCGGGTAAGATCGAG
CTAGACGACAAAGATATTACAGATTACCCCAGAGTCTCATTTCGCCAGCAGTTTGGTATGGTTTTACAGGAAACATGGCT
CAAGACGGGGACGATTCATGAGAATATTGCTTTTGGGCGACCAGAGGCTAGCCGAGAAGAAGTGATTGAAGCAGCTAAAG
CTGCCAATGCTCATTTCTTTATCCAGCAATTGCCGCATGGCTATGATACTTATTTGGCAGATGCAGGAGATTCTTTGTCA
CAAGGACAACGGCAGTTATTGACGATTGCGCGTGTTTTTCTAGCGGTTCCTAAAATCCTGATTTTGGATGAGGCAACCTC
CTCTATTGATACGCGGACTGAAATGCTCATTCAAGAGGCTTTTAATAAGCTAATGGTAGGACGAACCAGTTTTATCATTG
CTCATCGCTTATCTACCATTCAGAATGCAGATATCATTTTAGTGTTAGTTGACGGAGATATTGTGGAACATGGCAGTCAT
CAAGAGCTGATGCAAGCAAAAGGCGTTTATTACCAAATGCAGACAGCTCAAGGGAACTTAGCTGTTTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(25-295)

ABC transporter (ABC_tran)

(359-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.896

99.485

0.397