Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   FOC71_RS03335 Genome accession   NZ_CP053999
Coordinates   627072..629426 (-) Length   784 a.a.
NCBI ID   WP_003074641.1    Uniprot ID   -
Organism   Streptococcus intermedius strain FDAARGOS_769     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 622072..634426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC71_RS03320 (FOC71_03320) - 622270..622985 (-) 716 Protein_625 threonine/serine exporter family protein -
  FOC71_RS03325 (FOC71_03325) pflB 623146..625461 (-) 2316 WP_003074645.1 formate C-acetyltransferase -
  FOC71_RS03330 (FOC71_03330) dinB 625793..626857 (+) 1065 WP_003074643.1 DNA polymerase IV -
  FOC71_RS03335 (FOC71_03335) recD/recD2/recDB 627072..629426 (-) 2355 WP_003074641.1 ATP-dependent RecD-like DNA helicase Machinery gene
  FOC71_RS03340 (FOC71_03340) lepB 629652..630266 (-) 615 WP_003074639.1 signal peptidase I -
  FOC71_RS03345 (FOC71_03345) rnhC 630270..631160 (-) 891 WP_003074637.1 ribonuclease HIII -
  FOC71_RS03350 (FOC71_03350) - 631246..631551 (+) 306 WP_003074635.1 hypothetical protein -
  FOC71_RS03355 (FOC71_03355) - 631548..632096 (+) 549 WP_003070931.1 CvpA family protein -

Sequence

Protein


Download         Length: 784 a.a.        Molecular weight: 88306.34 Da        Isoelectric Point: 4.6258

>NTDB_id=397000 FOC71_RS03335 WP_003074641.1 627072..629426(-) (recD/recD2/recDB) [Streptococcus intermedius strain FDAARGOS_769]
MEFYFSGTIERIIFENPSSFFRILLLNIDDTDADFDDFEIIVTGTMADIIEGEDYTFWGNLVQHPKYGEQLKLIRYERAK
PTSKGLVKYFSSDHFKGIGVKTAQKIVDLYGDNTIDKVLAEPEKLHDIVGLSAKNREAFIMKLRQNYGTERVLAKLSEYG
ISNKLAFQIQDFYKEETLEIVEHYPYQLVEDIQGIGFKIADQLAQSLGIESTAPERFRAGLLHTLLTQSMEKGDTYLEAK
ELLEHTIELLESSRQIELDPNSVANELAHLIEEDKVQNVDTKIFENSLFFAEEGICNNLLRILEKGNQNKYEPENIEAAL
AQIEEKFAISYDAIQKQAICDAIQHKIFILTGGPGTGKTTVINGIIAVYALLHGLDLHKSQDLPILLAAPTGRAARRMNE
LTGLPSATIHRHLGMTGDDDTSHVDDYLDADFIIVDEFSMVDTWLANQLLSNISSNSKLLIVGDADQLPSVSPGQVLADL
LKIPLLPQTKLEKIYRQGEDSTIVTLASQIQKGALPIDFVEKKADRSYFEVRSEQIPQMIERIVEAAIRSGIPAQDVQVL
APMYRGQAGIDHINQLMQDLINPAEKEQLVFEATDGQYRQGDRVIHLVNDTESNVFNGDLGYITDLLPAKYTDSKQDELT
INFDGNEIVYQRSELYKIRLAYAMSIHKSQGSEFPVVILPIISSSHRMLQRNLIYTAITRAKSKLILLGEKSAFAFAVQN
TGTTRKTYLLQRFANLPTDEKIMHTSMDDLKTSVEDYVLTEENFSKINPMIGLTEEDIHSIFGN

Nucleotide


Download         Length: 2355 bp        

>NTDB_id=397000 FOC71_RS03335 WP_003074641.1 627072..629426(-) (recD/recD2/recDB) [Streptococcus intermedius strain FDAARGOS_769]
ATGGAATTTTACTTTTCAGGTACCATCGAACGCATTATCTTTGAAAATCCCAGCAGTTTTTTCCGGATTCTGTTGCTAAA
TATTGACGACACCGATGCGGATTTTGATGATTTTGAGATTATTGTCACCGGCACTATGGCAGATATTATAGAGGGGGAAG
ACTATACCTTCTGGGGAAATCTCGTGCAACACCCTAAATATGGTGAACAGCTCAAACTAATACGCTATGAGCGTGCTAAA
CCAACCAGCAAAGGCTTGGTCAAATATTTTTCAAGCGACCATTTTAAAGGAATCGGTGTAAAAACAGCACAAAAAATTGT
GGATCTCTACGGCGATAACACGATTGATAAGGTCTTGGCAGAACCCGAAAAATTACATGATATTGTAGGCCTTTCTGCTA
AAAATCGCGAAGCCTTTATTATGAAACTAAGACAGAACTACGGTACCGAGCGAGTCCTTGCAAAGCTATCTGAGTACGGC
ATTTCAAATAAACTTGCCTTTCAGATTCAAGATTTTTACAAAGAAGAGACGCTCGAAATTGTCGAGCACTATCCTTATCA
GTTAGTGGAAGATATTCAAGGAATAGGATTTAAAATTGCCGACCAACTGGCGCAAAGCTTAGGAATTGAAAGTACTGCTC
CAGAGCGCTTCCGTGCAGGATTACTCCACACACTTCTAACCCAGTCCATGGAAAAAGGCGACACCTATCTTGAAGCAAAA
GAGCTTCTGGAACACACCATTGAACTTCTGGAAAGCTCCCGACAGATCGAACTAGATCCAAATTCCGTTGCAAATGAGCT
AGCTCATTTGATTGAAGAAGATAAAGTCCAAAATGTCGATACGAAGATTTTTGAAAACAGTCTTTTTTTTGCTGAAGAAG
GAATCTGCAACAATCTCTTACGCATTCTGGAGAAGGGAAATCAAAATAAATATGAACCAGAAAACATCGAAGCTGCGCTT
GCTCAAATCGAAGAAAAATTTGCTATTTCTTACGATGCGATTCAGAAGCAAGCTATTTGCGATGCTATCCAGCATAAAAT
TTTCATCTTAACAGGTGGTCCTGGAACTGGAAAAACGACCGTTATCAATGGAATTATTGCTGTCTACGCGCTGCTACATG
GTCTGGATTTACACAAATCTCAAGATTTACCTATCCTTTTAGCTGCTCCAACTGGGCGCGCTGCTAGACGCATGAATGAA
TTAACAGGACTGCCAAGTGCGACGATTCATCGACATTTAGGTATGACAGGAGACGATGACACCAGTCATGTAGACGATTA
TTTGGACGCAGATTTTATTATTGTGGACGAATTTTCAATGGTAGATACTTGGTTAGCCAATCAACTACTCAGCAACATCT
CTTCCAATAGCAAGCTACTCATTGTTGGAGATGCCGATCAGCTGCCTTCTGTCAGTCCTGGACAAGTGTTAGCAGATTTG
CTGAAAATCCCCCTCCTTCCACAGACCAAATTAGAAAAAATTTATCGGCAGGGCGAAGATTCCACGATCGTTACCTTAGC
TAGTCAGATTCAAAAAGGCGCTCTGCCAATTGACTTCGTTGAAAAAAAAGCAGATCGTTCTTATTTTGAAGTTCGTAGCG
AGCAGATTCCACAGATGATTGAACGCATTGTAGAAGCTGCTATCCGCAGTGGCATTCCAGCTCAAGATGTGCAGGTGCTT
GCTCCTATGTACCGTGGACAAGCCGGCATTGACCACATCAATCAACTCATGCAAGATCTGATTAATCCTGCCGAAAAAGA
ACAACTCGTCTTTGAAGCAACTGATGGTCAATATCGACAAGGCGATCGGGTTATTCATCTGGTCAACGATACTGAAAGCA
ATGTGTTTAATGGTGATTTAGGCTATATCACCGATTTGCTACCAGCAAAATATACGGACTCTAAGCAGGACGAACTGACT
ATCAATTTCGACGGCAATGAAATTGTTTATCAACGCAGTGAATTGTATAAAATTCGTCTGGCCTATGCCATGAGCATCCA
CAAATCTCAGGGTAGTGAATTTCCTGTCGTCATTTTACCAATTATCTCCAGCAGCCACCGCATGCTGCAACGCAATCTTA
TCTATACTGCTATCACCCGCGCCAAGAGCAAATTGATTCTTCTTGGGGAAAAGTCTGCCTTTGCCTTTGCTGTCCAAAAT
ACTGGGACAACACGTAAAACCTATCTCCTTCAACGTTTTGCAAATCTACCAACAGATGAAAAAATAATGCACACTTCTAT
GGATGATTTGAAAACAAGCGTGGAAGACTATGTCTTGACTGAAGAAAATTTTTCGAAAATAAATCCTATGATCGGACTGA
CTGAAGAAGATATCCACAGTATCTTTGGCAACTAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(661-708)

Helix-hairpin-helix containing domain (HHH_RecD2)

(146-236)

AAA domain (AAA_30)

(331-528)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(573-643)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

42

95.663

0.402