Detailed information NTG0396893

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: FOC73_RS04160
• Genome accession: NZ_CP053998
• Coordinates: 901370..903874 (+)
• Length: 834 a.a.
• NCBI ID: WP_002884698.1
• Uniprot ID: -
• Organism: Streptococcus salivarius strain FDAARGOS_771
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 896370..908874

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FOC73_RS04140 (FOC73_04140)	-	898589..899131 (-)	543	WP_002884677.1	CvpA family protein	-
FOC73_RS04145 (FOC73_04145)	-	899128..899442 (-)	315	WP_004183554.1	hypothetical protein	-
FOC73_RS04150 (FOC73_04150)	rnhC	899759..900649 (+)	891	WP_037604730.1	ribonuclease HIII	-
FOC73_RS04155 (FOC73_04155)	lepB	900668..901309 (+)	642	WP_002884233.1	signal peptidase I	-
FOC73_RS04160 (FOC73_04160)	recD/recD2/recDB	901370..903874 (+)	2505	WP_002884698.1	ATP-dependent RecD-like DNA helicase	Machinery gene
FOC73_RS04165 (FOC73_04165)	-	903926..904252 (-)	327	WP_002884560.1	AzlD domain-containing protein	-
FOC73_RS04170 (FOC73_04170)	-	904239..904931 (-)	693	WP_002884750.1	AzlC family ABC transporter permease	-
FOC73_RS04175 (FOC73_04175)	tsaD	904983..905996 (-)	1014	WP_002884621.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-
FOC73_RS04180 (FOC73_04180)	rimI	905996..906451 (-)	456	WP_037604732.1	ribosomal protein S18-alanine N-acetyltransferase	-
FOC73_RS04185 (FOC73_04185)	tsaB	906411..907097 (-)	687	WP_002884700.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
FOC73_RS04190 (FOC73_04190)	-	907358..907588 (+)	231	WP_002884752.1	DNA-dependent RNA polymerase subunit epsilon	-

Sequence

Protein

• Length: 834 a.a.
• Molecular weight: 94006.18 Da
• Isoelectric Point: 4.4263

>NTDB_id=396893 FOC73_RS04160 WP_002884698.1 901370..903874(+) (recD/recD2/recDB) [Streptococcus salivarius strain FDAARGOS_771]
MQDFYFSGTIERVIFENASNFFRILLLEIDETDSDFEDYEIIVTGTMGDVMEGEDYTFWGQLTNHPKYGEQLQMTRYERS
KPSASGLIKYFASDNFKGIGKKTAERIVEIYGEDPIDQILEDPSKLEQIPNLSKVNREAFVAKLKINYGTEQILSKLSNY
GLTPKAASQIFNQYKEESLNLIEEHPYLLVEEVQGIGFKIADQLAERLGIASDAPERLRAALIHCLLEASMEEGDTYIEA
KALLERTIILLESARQIELDPALVAKELTNLIQEDKVQNIETKIFDNTLYFAEQGIYTHLTRIIKDQPDISAEDKIQASL
EEVEEELGITYDKVQKDAIIKALQSKVFILTGGPGTGKTTVINGIIKTYADLHGLDLKKSDLPIILAAPTGRAARRMNEL
TQLPSATIHRHLGLNSEDDFKTLEDYLDCDLIIIDEFSMVDTWLANQLFESISDSTQVVIVGDQDQLPSVGPGQVLADLL
QIDDLPKVSLTKIFRQSEDSTIVTLASQMRQGQLPADFTEKKADRSYFEANANHIPQMVPKIVSAAIKSGIAAQDVQILA
PMYRGQAGINNLNTIMQDLLNPQEKANQFAFNDIFFRKNDKILHLVNDTELNVFNGDIGIITDLIPGKYTESKQDEIYMS
FDGNEVIYPRNEWNKITLAYAMSIHKSQGSEFPVVILPITRQSGRMLQRNLIYTAITRAKSKLVMLGEITAFDYAVHNEG
AKRNTYLIQRFEQTYTQAVDKSVEKIVKNEATGASNQTKTKNNDPSETLENKDFSENINPSPDFVNTYSQPVDKSVNKPV
QTEENYRLTEENWTTIDPMIGLSEDDIAAFFNNN

Nucleotide

• Length: 2505 bp

>NTDB_id=396893 FOC73_RS04160 WP_002884698.1 901370..903874(+) (recD/recD2/recDB) [Streptococcus salivarius strain FDAARGOS_771]
ATGCAAGATTTTTATTTTTCAGGAACTATCGAACGCGTCATTTTCGAAAACGCTAGTAATTTTTTCCGTATTCTACTCTT
AGAAATTGACGAAACAGACAGTGATTTTGAGGACTATGAAATCATTGTTACAGGAACCATGGGAGATGTCATGGAAGGTG
AAGATTATACCTTCTGGGGTCAGCTAACCAATCATCCCAAATATGGTGAACAACTCCAAATGACGCGCTACGAACGGTCA
AAACCTTCTGCTAGCGGTCTTATCAAGTATTTCGCTAGCGACAATTTTAAGGGGATTGGTAAGAAAACAGCTGAGCGTAT
TGTCGAGATTTATGGCGAAGACCCAATTGACCAGATTCTCGAGGATCCTAGCAAGTTAGAACAGATTCCTAACCTTTCAA
AGGTAAACCGAGAAGCCTTCGTTGCAAAGTTAAAAATCAACTATGGAACCGAGCAAATCTTGTCCAAACTTTCCAACTAT
GGACTCACACCAAAAGCTGCCTCACAAATTTTCAACCAATATAAGGAAGAATCGCTCAACCTTATCGAAGAACACCCTTA
TCTCTTGGTAGAGGAAGTTCAAGGAATCGGATTTAAAATAGCTGACCAACTAGCCGAACGCTTAGGAATTGCTAGTGATG
CTCCTGAACGTTTACGAGCTGCCTTGATTCATTGTCTGCTAGAAGCCAGTATGGAAGAAGGCGACACCTACATCGAAGCC
AAAGCTTTGCTCGAACGAACTATCATCCTTTTGGAAAGTGCTCGTCAGATTGAACTTGACCCTGCCTTGGTCGCTAAGGA
ATTAACCAATCTCATCCAAGAGGATAAAGTGCAAAATATAGAAACTAAAATCTTTGATAATACCCTATATTTTGCGGAAC
AGGGTATCTATACCCACCTAACTCGTATCATAAAAGACCAACCTGACATCAGTGCAGAGGACAAAATCCAAGCAAGTCTT
GAAGAGGTGGAAGAGGAGCTTGGTATTACTTATGATAAGGTTCAAAAAGATGCCATTATCAAAGCCCTACAAAGCAAGGT
CTTCATCCTGACAGGTGGTCCCGGGACAGGTAAAACCACCGTTATTAACGGAATCATTAAAACTTATGCCGACCTTCATG
GTCTAGATCTCAAGAAGTCTGATTTGCCTATTATTTTAGCGGCACCAACAGGTCGGGCTGCTCGTCGGATGAACGAACTC
ACCCAACTCCCTAGCGCCACTATCCATAGACATTTGGGACTCAATAGCGAGGACGATTTCAAGACCTTAGAGGACTATCT
CGATTGCGACTTGATTATCATCGATGAGTTTTCTATGGTTGATACTTGGTTGGCCAATCAACTCTTTGAAAGTATCTCTG
ATTCAACCCAAGTCGTCATTGTGGGTGACCAAGACCAACTGCCTTCCGTAGGCCCTGGCCAGGTCTTGGCTGACCTTTTG
CAGATTGATGACTTGCCTAAGGTTTCTCTGACCAAAATTTTCAGACAATCTGAGGACTCCACCATCGTTACCCTAGCTAG
TCAGATGCGTCAAGGCCAACTACCCGCTGATTTCACAGAGAAAAAGGCTGACCGCTCTTACTTTGAGGCCAATGCCAACC
ATATTCCACAGATGGTCCCTAAAATTGTCTCTGCCGCTATAAAGAGCGGGATTGCTGCTCAGGATGTGCAGATTCTAGCT
CCCATGTATCGAGGACAGGCTGGTATTAACAATCTCAATACTATTATGCAGGACCTACTTAATCCTCAAGAAAAGGCCAA
TCAATTTGCCTTTAATGACATTTTCTTCCGTAAGAACGACAAGATTCTCCATCTGGTCAACGATACCGAACTCAATGTCT
TCAATGGCGACATCGGCATCATTACTGATCTCATCCCTGGTAAATATACTGAAAGCAAGCAGGACGAAATTTACATGTCC
TTTGATGGCAATGAGGTTATCTATCCTCGTAACGAATGGAATAAGATTACTCTGGCCTATGCCATGTCAATCCACAAATC
CCAAGGGAGTGAGTTCCCAGTCGTTATCCTTCCCATCACACGCCAAAGTGGACGTATGCTACAACGTAACCTCATCTACA
CTGCTATCACACGCGCCAAGAGTAAGCTAGTCATGTTAGGGGAAATCACAGCTTTCGATTATGCTGTTCACAACGAGGGG
GCTAAACGAAACACTTATCTCATCCAACGTTTTGAACAAACTTATACACAAGCTGTTGATAAGTCTGTCGAAAAGATTGT
TAAAAACGAGGCAACAGGCGCCTCCAATCAAACAAAAACGAAAAACAACGACCCCTCAGAAACCCTTGAAAACAAAGACT
TTTCGGAAAATATCAATCCATCCCCAGATTTTGTTAACACTTATTCACAACCTGTGGATAAGTCTGTTAACAAACCTGTG
CAAACAGAAGAAAACTATCGTTTAACTGAAGAAAATTGGACAACTATAGATCCAATGATTGGGCTCAGTGAAGACGATAT
TGCTGCCTTTTTTAACAATAACTAA

Domains

Predicted by InterProScan.

• UvrD-like helicase C-terminal domain (UvrD_C_2) (659-705)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (572-638)

• Helix-hairpin-helix containing domain (HHH_RecD2) (147-237)

• AAA domain (AAA_30) (331-523)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	44.98	89.568	0.403