Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   FOC73_RS03565 Genome accession   NZ_CP053998
Coordinates   773162..773947 (-) Length   261 a.a.
NCBI ID   WP_002884784.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_771     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 768162..778947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC73_RS03545 (FOC73_03545) - 768661..769542 (-) 882 WP_002884465.1 glycosyltransferase family 2 protein -
  FOC73_RS03550 (FOC73_03550) - 769546..770754 (-) 1209 WP_002884633.1 glycosyltransferase -
  FOC73_RS03555 (FOC73_03555) - 770949..772388 (-) 1440 WP_002884744.1 6-phospho-beta-glucosidase -
  FOC73_RS03560 (FOC73_03560) - 772545..773096 (-) 552 WP_002884190.1 cysteine hydrolase family protein -
  FOC73_RS03565 (FOC73_03565) codY 773162..773947 (-) 786 WP_002884784.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  FOC73_RS03570 (FOC73_03570) - 774215..775429 (-) 1215 WP_002884715.1 pyridoxal phosphate-dependent aminotransferase -
  FOC73_RS03575 (FOC73_03575) - 775789..776241 (+) 453 WP_002884397.1 universal stress protein -
  FOC73_RS03580 (FOC73_03580) - 776321..777073 (-) 753 WP_002884718.1 hypothetical protein -
  FOC73_RS03585 (FOC73_03585) pflA 777143..777943 (-) 801 WP_002884535.1 pyruvate formate-lyase-activating protein -
  FOC73_RS03590 (FOC73_03590) - 778129..778848 (-) 720 WP_002884438.1 LPXTG cell wall anchor domain-containing protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28829.85 Da        Isoelectric Point: 4.3715

>NTDB_id=396883 FOC73_RS03565 WP_002884784.1 773162..773947(-) (codY) [Streptococcus salivarius strain FDAARGOS_771]
MANLLAKTRKITSILQRSVDSLEGDLPYNNMAAQLADIIDCNAAIVNGGGALLGFAMKYKTNNDRVEEFFEAKQLPEEYT
RGISRVYDTQENIGIDSDLTIFPVESKDDFPDGLTTIAPIYGGGMRLGSFIIWRNDHDFVDEDLILVEIASTVVGLQLLN
LQTENLEETIRKQTAINMAINTLSYSEIKAVSAILNELDGLEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLNEGIYDKLKEYE

Nucleotide


Download         Length: 786 bp        

>NTDB_id=396883 FOC73_RS03565 WP_002884784.1 773162..773947(-) (codY) [Streptococcus salivarius strain FDAARGOS_771]
ATGGCAAATTTGCTGGCTAAAACACGTAAAATTACATCTATCTTGCAACGCTCAGTAGACAGCTTGGAAGGAGATCTTCC
ATATAACAATATGGCTGCTCAATTGGCGGATATCATTGATTGTAACGCTGCTATCGTTAATGGTGGTGGTGCTCTCCTTG
GTTTTGCCATGAAGTACAAAACCAACAATGATCGTGTAGAAGAGTTTTTTGAAGCTAAACAACTTCCAGAAGAATACACA
CGTGGAATCAGCCGTGTTTATGACACTCAAGAAAACATTGGTATTGACAGTGACTTGACCATTTTCCCTGTGGAATCAAA
AGATGACTTCCCAGATGGTTTGACTACAATTGCCCCTATCTATGGTGGTGGGATGCGTCTTGGTTCTTTCATCATTTGGC
GTAACGACCATGATTTTGTGGATGAAGATCTTATCTTGGTTGAGATTGCCTCTACGGTTGTTGGTTTGCAGTTGTTGAAC
CTTCAAACAGAGAACTTGGAAGAAACAATTCGTAAACAAACAGCTATCAACATGGCAATTAATACCTTGTCTTACTCAGA
AATCAAGGCAGTTTCAGCTATCTTGAATGAGTTGGACGGTTTGGAAGGTCGCTTGACAGCGTCTGTTATCGCTGACCGTA
TCGGAATTACACGTTCAGTTATCGTTAATGCCCTTCGTAAGTTGGAATCAGCTGGTATTATTGAGAGCCGTTCACTCGGT
ATGAAAGGGACTTATCTTAAAGTCCTTAACGAAGGTATCTACGATAAATTGAAAGAATACGAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(201-261)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

64.981

98.467

0.64
  codY Bacillus subtilis subsp. subtilis str. 168

53.036

94.636

0.502