Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   HQN50_RS27605 Genome accession   NZ_CP053922
Coordinates   5908178..5908702 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain YD001     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5903178..5913702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQN50_RS27590 aroB 5904294..5905400 (-) 1107 WP_003107839.1 3-dehydroquinate synthase -
  HQN50_RS27595 aroK 5905450..5905968 (-) 519 WP_003095833.1 shikimate kinase AroK -
  HQN50_RS27600 pilQ 5905980..5908124 (-) 2145 WP_012614629.1 type 4a pilus secretin PilQ Machinery gene
  HQN50_RS27605 comL/pilP 5908178..5908702 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  HQN50_RS27610 pilO 5908699..5909322 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  HQN50_RS27615 pilN 5909319..5909915 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  HQN50_RS27620 pilM 5909915..5910979 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  HQN50_RS27625 - 5911164..5913632 (+) 2469 WP_003114576.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=396826 HQN50_RS27605 WP_003095836.1 5908178..5908702(-) (comL/pilP) [Pseudomonas aeruginosa strain YD001]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=396826 HQN50_RS27605 WP_003095836.1 5908178..5908702(-) (comL/pilP) [Pseudomonas aeruginosa strain YD001]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGGGCCCGACCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362