Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   HQN50_RS25060 Genome accession   NZ_CP053922
Coordinates   5337963..5338388 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain YD001     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5332963..5343388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQN50_RS25045 pilX 5333527..5334114 (+) 588 WP_003102605.1 type 4a pilus minor pilin PilX -
  HQN50_RS25050 pilY1 5334126..5337617 (+) 3492 WP_003102607.1 type 4a pilus biogenesis protein PilY1 -
  HQN50_RS25055 pilY2 5337619..5337966 (+) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  HQN50_RS25060 comF 5337963..5338388 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  HQN50_RS25065 ispH 5338435..5339379 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  HQN50_RS25070 fkpB 5339465..5339905 (-) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  HQN50_RS25075 lspA 5339898..5340407 (-) 510 WP_003102615.1 signal peptidase II -
  HQN50_RS25080 ileS 5340400..5343231 (-) 2832 WP_003102617.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=396820 HQN50_RS25060 WP_003094721.1 5337963..5338388(+) (comF) [Pseudomonas aeruginosa strain YD001]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=396820 HQN50_RS25060 WP_003094721.1 5337963..5338388(+) (comF) [Pseudomonas aeruginosa strain YD001]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383