Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   HQN50_RS02530 Genome accession   NZ_CP053922
Coordinates   558694..559419 (-) Length   241 a.a.
NCBI ID   WP_023088772.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain YD001     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 553694..564419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQN50_RS02505 - 554166..554681 (+) 516 WP_003084789.1 glycine cleavage system protein R -
  HQN50_RS02510 rarD 555371..556267 (-) 897 WP_003121788.1 EamA family transporter RarD -
  HQN50_RS02515 - 556470..557444 (-) 975 WP_003084794.1 serine/threonine protein kinase -
  HQN50_RS02520 - 557506..558264 (-) 759 WP_003084796.1 TOBE domain-containing protein -
  HQN50_RS02525 - 558332..558652 (-) 321 WP_023088771.1 YfiM family lipoprotein -
  HQN50_RS02530 comF 558694..559419 (-) 726 WP_023088772.1 ComF family protein Machinery gene
  HQN50_RS02535 - 559558..559851 (-) 294 WP_003084806.1 hypothetical protein -
  HQN50_RS02540 - 559905..560831 (-) 927 WP_003121790.1 LysR family transcriptional regulator -
  HQN50_RS02545 - 560949..561707 (+) 759 WP_003103315.1 5-oxoprolinase subunit PxpA -
  HQN50_RS02550 - 561784..562032 (+) 249 WP_003084813.1 acetyl-CoA carboxylase -
  HQN50_RS02555 - 562043..563419 (+) 1377 WP_003103320.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  HQN50_RS02560 - 563421..564299 (+) 879 WP_003103323.1 allophanate hydrolase subunit 1 -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27045.58 Da        Isoelectric Point: 10.5596

>NTDB_id=396756 HQN50_RS02530 WP_023088772.1 558694..559419(-) (comF) [Pseudomonas aeruginosa strain YD001]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLIIRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPHPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPTSDVRGLHLALVDDVLTTGATAECLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=396756 HQN50_RS02530 WP_023088772.1 558694..559419(-) (comF) [Pseudomonas aeruginosa strain YD001]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCATCCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCACCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCACGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCCGGCGAGCTGGACCTGCGCTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGCCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCACCAGCGATGTTCGCGGGCTGCACCTGGCACTAGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGTGCCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Double zinc ribbon domain (DZR_2)

(9-65)

Phosphoribosyl transferase domain (Pribosyltran)

(139-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.174

100

0.382